Analysis of interatomic Contacts of Structural Units in PDB entry:
6TM0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6TM0 entry

There are 2 chains in PDB entry 6TM0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 23	ARG 998
B	SER 23	LYS 667

There are 46 helices in PDB entry 6TM0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	52	56	Right-handed alpha
Helix 2	AA2	A	107	116	Right-handed alpha
Helix 3	AA3	A	178	185	Right-handed alpha
Helix 4	AA4	A	197	202	Right-handed alpha
Helix 5	AA5	A	208	215	Right-handed alpha
Helix 6	AA6	A	218	220	Right-handed 310
Helix 7	AA7	A	221	230	Right-handed alpha
Helix 8	AA8	A	274	281	Right-handed alpha
Helix 9	AA9	A	281	290	Right-handed alpha
Helix 10	AB1	A	381	388	Right-handed alpha
Helix 11	AB2	A	467	477	Right-handed alpha
Helix 12	AB3	A	524	536	Right-handed alpha
Helix 13	AB4	A	612	618	Right-handed alpha
Helix 14	AB5	A	663	667	Right-handed 310
Helix 15	AB6	A	687	696	Right-handed alpha
Helix 16	AB7	A	722	735	Right-handed alpha
Helix 17	AB8	A	737	741	Right-handed 310
Helix 18	AB9	A	758	762	Right-handed 310
Helix 19	AC1	A	781	785	Right-handed 310
Helix 20	AC2	A	864	868	Right-handed 310
Helix 21	AC3	A	869	871	Right-handed 310
Helix 22	AC4	A	892	894	Right-handed 310
Helix 23	AC5	A	988	996	Right-handed alpha
Helix 24	AC6	B	52	56	Right-handed alpha
Helix 25	AC7	B	107	116	Right-handed alpha
Helix 26	AC8	B	178	185	Right-handed alpha
Helix 27	AC9	B	197	202	Right-handed alpha
Helix 28	AD1	B	208	215	Right-handed alpha
Helix 29	AD2	B	218	220	Right-handed 310
Helix 30	AD3	B	221	226	Right-handed alpha
Helix 31	AD4	B	274	281	Right-handed alpha
Helix 32	AD5	B	281	290	Right-handed alpha
Helix 33	AD6	B	381	388	Right-handed alpha
Helix 34	AD7	B	467	477	Right-handed alpha
Helix 35	AD8	B	524	535	Right-handed alpha
Helix 36	AD9	B	612	618	Right-handed alpha
Helix 37	AE1	B	663	667	Right-handed 310
Helix 38	AE2	B	687	696	Right-handed alpha
Helix 39	AE3	B	722	735	Right-handed alpha
Helix 40	AE4	B	737	741	Right-handed 310
Helix 41	AE5	B	758	762	Right-handed 310
Helix 42	AE6	B	781	785	Right-handed 310
Helix 43	AE7	B	864	868	Right-handed 310
Helix 44	AE8	B	869	871	Right-handed 310
Helix 45	AE9	B	892	894	Right-handed 310
Helix 46	AF1	B	988	996	Right-handed alpha

There are 24 sheets in PDB entry 6TM0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	32	first strand
Strand 2	A	35	39	anti-parallel
Strand 3	A	50	51	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	68	first strand
Strand 2	A	74	81	anti-parallel
Strand 3	A	136	142	anti-parallel
Strand 4	A	148	155	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	88	first strand
Strand 2	A	104	106	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	244	first strand
Strand 2	A	597	599	anti-parallel
Strand 3	A	581	585	anti-parallel
Strand 4	A	672	676	anti-parallel
Strand 5	A	187	189	parallel
Strand 6	A	251	253	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	263	first strand
Strand 2	A	378	380	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	479	482	first strand
Strand 2	A	486	490	anti-parallel
Strand 3	A	499	504	anti-parallel
Strand 4	A	513	514	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	520	first strand
Strand 2	A	745	747	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	560	568	first strand
Strand 2	A	571	578	anti-parallel
Strand 3	A	715	721	anti-parallel
Strand 4	A	750	754	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	801	808	first strand
Strand 2	A	821	827	anti-parallel
Strand 3	A	830	837	anti-parallel
Strand 4	A	842	843	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	801	808	first strand
Strand 2	A	821	827	anti-parallel
Strand 3	A	830	837	anti-parallel
Strand 4	A	856	860	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	873	879	first strand
Strand 2	A	884	890	anti-parallel
Strand 3	A	910	918	anti-parallel
Strand 4	A	936	946	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	951	955	first strand
Strand 2	A	961	966	anti-parallel
Strand 3	A	976	981	anti-parallel
Strand 4	A	984	987	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	32	first strand
Strand 2	B	35	39	anti-parallel
Strand 3	B	50	51	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	68	first strand
Strand 2	B	74	81	anti-parallel
Strand 3	B	136	142	anti-parallel
Strand 4	B	148	155	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	88	first strand
Strand 2	B	104	106	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	244	first strand
Strand 2	B	597	599	anti-parallel
Strand 3	B	581	585	anti-parallel
Strand 4	B	672	676	anti-parallel
Strand 5	B	187	189	parallel
Strand 6	B	251	253	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	261	263	first strand
Strand 2	B	378	380	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	479	482	first strand
Strand 2	B	486	490	anti-parallel
Strand 3	B	499	504	anti-parallel
Strand 4	B	513	514	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	518	520	first strand
Strand 2	B	745	747	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	560	568	first strand
Strand 2	B	571	578	anti-parallel
Strand 3	B	715	721	anti-parallel
Strand 4	B	750	754	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	801	808	first strand
Strand 2	B	821	827	anti-parallel
Strand 3	B	830	837	anti-parallel
Strand 4	B	842	843	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	801	808	first strand
Strand 2	B	821	827	anti-parallel
Strand 3	B	830	837	anti-parallel
Strand 4	B	856	860	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	873	879	first strand
Strand 2	B	884	890	anti-parallel
Strand 3	B	910	918	anti-parallel
Strand 4	B	936	946	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	951	955	first strand
Strand 2	B	961	966	anti-parallel
Strand 3	B	976	981	anti-parallel
Strand 4	B	984	987	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6TM0

Analysis of interatomic Contacts of Structural Units in PDB entry:
6TM0