Analysis of interatomic Contacts of Structural Units in PDB entry:
6TM2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6TM2 entry

There are 6 chains in PDB entry 6TM2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 35	CYS 749
B	ASN 35	CYS 749
C	ARG 780	PRO 1197
D	ARG 780	PRO 1197
E	CYS 1302	PRO 1391
F	CYS 1302	PRO 1391

There are 62 helices in PDB entry 6TM2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	159	162	Right-handed 310
Helix 2	AA2	A	189	196	Right-handed alpha
Helix 3	AA3	A	221	230	Right-handed alpha
Helix 4	AA4	A	231	238	Right-handed 310
Helix 5	AA5	A	243	256	Right-handed alpha
Helix 6	AA6	A	263	266	Right-handed 310
Helix 7	AA7	A	267	279	Right-handed alpha
Helix 8	AA8	A	316	321	Right-handed 310
Helix 9	AA9	A	347	351	Right-handed 310
Helix 10	AB1	A	518	521	Right-handed 310
Helix 11	AB2	A	549	554	Right-handed alpha
Helix 12	AB3	A	555	557	Right-handed 310
Helix 13	AB4	A	572	577	Right-handed alpha
Helix 14	AB5	A	579	589	Right-handed alpha
Helix 15	AB6	A	590	592	Right-handed 310
Helix 16	AB7	A	598	602	Right-handed 310
Helix 17	AB8	A	609	621	Right-handed alpha
Helix 18	AB9	A	623	636	Right-handed alpha
Helix 19	AC1	A	636	641	Right-handed alpha
Helix 20	AC2	A	677	684	Right-handed alpha
Helix 21	AC3	B	159	162	Right-handed 310
Helix 22	AC4	B	189	196	Right-handed alpha
Helix 23	AC5	B	221	230	Right-handed alpha
Helix 24	AC6	B	231	238	Right-handed 310
Helix 25	AC7	B	243	256	Right-handed alpha
Helix 26	AC8	B	263	266	Right-handed 310
Helix 27	AC9	B	267	279	Right-handed alpha
Helix 28	AD1	B	316	321	Right-handed 310
Helix 29	AD2	B	347	351	Right-handed 310
Helix 30	AD3	B	518	521	Right-handed 310
Helix 31	AD4	B	549	554	Right-handed alpha
Helix 32	AD5	B	555	557	Right-handed 310
Helix 33	AD6	B	572	577	Right-handed alpha
Helix 34	AD7	B	579	589	Right-handed alpha
Helix 35	AD8	B	590	592	Right-handed 310
Helix 36	AD9	B	598	602	Right-handed 310
Helix 37	AE1	B	609	621	Right-handed alpha
Helix 38	AE2	B	623	636	Right-handed alpha
Helix 39	AE3	B	636	641	Right-handed alpha
Helix 40	AE4	B	677	684	Right-handed alpha
Helix 41	AE5	C	998	1002	Right-handed 310
Helix 42	AE6	C	1013	1018	Right-handed alpha
Helix 43	AE7	C	1019	1021	Right-handed 310
Helix 44	AE8	C	1035	1040	Right-handed alpha
Helix 45	AE9	C	1043	1051	Right-handed alpha
Helix 46	AF1	C	1052	1054	Right-handed 310
Helix 47	AF2	C	1068	1080	Right-handed alpha
Helix 48	AF3	C	1087	1105	Right-handed alpha
Helix 49	AF4	C	1121	1125	Right-handed 310
Helix 50	AF5	C	1146	1150	Right-handed 310
Helix 51	AF6	D	998	1002	Right-handed 310
Helix 52	AF7	D	1013	1018	Right-handed alpha
Helix 53	AF8	D	1019	1021	Right-handed 310
Helix 54	AF9	D	1035	1040	Right-handed alpha
Helix 55	AG1	D	1043	1051	Right-handed alpha
Helix 56	AG2	D	1052	1054	Right-handed 310
Helix 57	AG3	D	1068	1080	Right-handed alpha
Helix 58	AG4	D	1087	1105	Right-handed alpha
Helix 59	AG5	D	1121	1125	Right-handed 310
Helix 60	AG6	D	1146	1150	Right-handed 310
Helix 61	AG7	E	1368	1371	Right-handed 310
Helix 62	AG8	F	1368	1371	Right-handed 310

There are 32 sheets in PDB entry 6TM2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	54	first strand
Strand 2	A	44	47	anti-parallel
Strand 3	A	36	40	anti-parallel
Strand 4	A	153	157	anti-parallel
Strand 5	A	143	148	anti-parallel
Strand 6	A	134	139	anti-parallel
Strand 7	A	126	130	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	65	first strand
Strand 2	A	74	80	anti-parallel
Strand 3	A	91	98	anti-parallel
Strand 4	A	101	105	anti-parallel
Strand 5	A	110	112	anti-parallel
Strand 6	A	115	116	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	305	first strand
Strand 2	A	326	330	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	354	first strand
Strand 2	A	359	360	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	367	first strand
Strand 2	A	371	375	anti-parallel
Strand 3	A	380	384	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	404	407	first strand
Strand 2	A	398	401	anti-parallel
Strand 3	A	389	394	anti-parallel
Strand 4	A	511	516	anti-parallel
Strand 5	A	500	505	anti-parallel
Strand 6	A	491	496	anti-parallel
Strand 7	A	482	485	anti-parallel
Strand 8	A	477	478	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	468	first strand
Strand 2	A	456	461	anti-parallel
Strand 3	A	442	451	anti-parallel
Strand 4	A	427	434	anti-parallel
Strand 5	A	413	420	anti-parallel
Strand 6	A	524	525	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	666	667	first strand
Strand 2	A	698	699	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	54	first strand
Strand 2	B	44	47	anti-parallel
Strand 3	B	36	40	anti-parallel
Strand 4	B	153	157	anti-parallel
Strand 5	B	143	148	anti-parallel
Strand 6	B	134	139	anti-parallel
Strand 7	B	126	130	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	65	first strand
Strand 2	B	74	80	anti-parallel
Strand 3	B	91	98	anti-parallel
Strand 4	B	101	105	anti-parallel
Strand 5	B	110	112	anti-parallel
Strand 6	B	115	116	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	305	first strand
Strand 2	B	326	330	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	354	first strand
Strand 2	B	359	360	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	365	367	first strand
Strand 2	B	371	375	anti-parallel
Strand 3	B	380	384	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	407	first strand
Strand 2	B	398	401	anti-parallel
Strand 3	B	389	394	anti-parallel
Strand 4	B	511	516	anti-parallel
Strand 5	B	500	505	anti-parallel
Strand 6	B	491	496	anti-parallel
Strand 7	B	482	485	anti-parallel
Strand 8	B	477	478	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	464	468	first strand
Strand 2	B	456	461	anti-parallel
Strand 3	B	442	451	anti-parallel
Strand 4	B	427	434	anti-parallel
Strand 5	B	413	420	anti-parallel
Strand 6	B	524	525	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	666	667	first strand
Strand 2	B	698	699	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	822	824	first strand
Strand 2	C	827	829	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	834	837	first strand
Strand 2	C	840	843	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	875	877	first strand
Strand 2	C	867	869	anti-parallel
Strand 3	C	858	863	anti-parallel
Strand 4	C	976	980	anti-parallel
Strand 5	C	966	970	anti-parallel
Strand 6	C	957	962	anti-parallel
Strand 7	C	949	954	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	883	888	first strand
Strand 2	C	900	908	anti-parallel
Strand 3	C	915	924	anti-parallel
Strand 4	C	927	932	anti-parallel
Strand 5	C	935	939	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1133	1135	first strand
Strand 2	C	1162	1164	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1173	1175	first strand
Strand 2	C	1180	1182	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	822	824	first strand
Strand 2	D	827	829	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	834	837	first strand
Strand 2	D	840	843	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	875	877	first strand
Strand 2	D	867	869	anti-parallel
Strand 3	D	858	863	anti-parallel
Strand 4	D	976	980	anti-parallel
Strand 5	D	966	970	anti-parallel
Strand 6	D	957	962	anti-parallel
Strand 7	D	949	954	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	883	888	first strand
Strand 2	D	900	908	anti-parallel
Strand 3	D	915	924	anti-parallel
Strand 4	D	927	932	anti-parallel
Strand 5	D	935	939	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1133	1135	first strand
Strand 2	D	1162	1164	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1173	1175	first strand
Strand 2	D	1180	1182	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1321	1324	first strand
Strand 2	E	1362	1366	anti-parallel
Strand 3	E	1356	1358	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1335	1340	first strand
Strand 2	E	1382	1387	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1321	1324	first strand
Strand 2	F	1362	1366	anti-parallel
Strand 3	F	1356	1358	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1335	1340	first strand
Strand 2	F	1382	1387	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6TM2

Analysis of interatomic Contacts of Structural Units in PDB entry:
6TM2