Analysis of interatomic Contacts of Structural Units in PDB entry:
6TM3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TM3 entry

There is 1 chain in PDB entry 6TM3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ASP 290
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 6TM3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 26Right-handed alpha
Helix 2
AA2
A
41 51Right-handed alpha
Helix 3
AA3
A
54 59Right-handed 310
Helix 4
AA4
A
69 84Right-handed alpha
Helix 5
AA5
A
98 114Right-handed alpha
Helix 6
AA6
A
130 143Right-handed alpha
Helix 7
AA7
A
153 169Right-handed alpha
Helix 8
AA8
A
179 187Right-handed alpha
Helix 9
AA9
A
205 209Right-handed 310
Helix 10
AB1
A
248 268Right-handed alpha
Helix 11
AB2
A
276 290Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6TM3. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 34first strand
Strand 2
A
5 10parallel
Strand 3
A
61 66parallel
Strand 4
A
91 94parallel
Strand 5
A
274 275parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 176first strand
Strand 2
A
146 151parallel
Strand 3
A
122 126parallel
Strand 4
A
192 195parallel
Strand 5
A
217 220parallel
Strand 6
A
244 247parallel
Strand 7
A
237 241anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il