Analysis of interatomic Contacts of Structural Units in PDB entry:
6TME


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TME entry

There are 4 chains in PDB entry 6TME (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 70SER 393
B
 ALA 68ASP 391
C
 ARG 1061ARG 1107
D
 ARG 1061TYR 1106
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 6TME. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
70 85Right-handed alpha
Helix 2
AA2
A
101 105Right-handed 310
Helix 3
AA3
A
137 143Right-handed 310
Helix 4
AA4
A
161 167Right-handed 310
Helix 5
AA5
A
185 191Right-handed 310
Helix 6
AA6
A
209 215Right-handed 310
Helix 7
AA7
A
232 238Right-handed 310
Helix 8
AA8
A
255 261Right-handed 310
Helix 9
AA9
A
279 285Right-handed 310
Helix 10
AB1
A
303 309Right-handed 310
Helix 11
AB2
A
327 332Right-handed alpha
Helix 12
AB3
A
351 354Right-handed 310
Helix 13
AB4
A
378 387Right-handed alpha
Helix 14
AB5
B
70 85Right-handed alpha
Helix 15
AB6
B
101 105Right-handed 310
Helix 16
AB7
B
137 143Right-handed 310
Helix 17
AB8
B
161 167Right-handed 310
Helix 18
AB9
B
185 191Right-handed 310
Helix 19
AC1
B
210 215Right-handed alpha
Helix 20
AC2
B
232 238Right-handed 310
Helix 21
AC3
B
255 261Right-handed 310
Helix 22
AC4
B
279 285Right-handed 310
Helix 23
AC5
B
303 309Right-handed 310
Helix 24
AC6
B
351 354Right-handed 310
Helix 25
AC7
B
378 388Right-handed alpha
Helix 26
AC8
C
1063 1068Right-handed alpha
Helix 27
AC9
C
1101 1107Right-handed alpha
Helix 28
AD1
D
1063 1068Right-handed alpha
Helix 29
AD2
D
1101 1106Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6TME. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 113first strand
Strand 2
A
116 126anti-parallel
Strand 3
A
148 150parallel
Strand 4
A
172 174parallel
Strand 5
A
196 198parallel
Strand 6
A
219 221parallel
Strand 7
A
242 244parallel
Strand 8
A
266 268parallel
Strand 9
A
290 292parallel
Strand 10
A
314 316parallel
Strand 11
A
338 340parallel
Strand 12
A
362 364parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 134first strand
Strand 2
A
155 158parallel
Strand 3
A
179 183parallel
Strand 4
A
203 206parallel
Strand 5
A
226 229parallel
Strand 6
A
249 252parallel
Strand 7
A
273 277parallel
Strand 8
A
297 299parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 326first strand
Strand 2
A
345 349parallel
Back to list of sheets
Back to top of page

There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 113first strand
Strand 2
B
116 126anti-parallel
Strand 3
B
148 150parallel
Strand 4
B
172 174parallel
Strand 5
B
196 198parallel
Strand 6
B
219 221parallel
Strand 7
B
242 244parallel
Strand 8
B
266 268parallel
Strand 9
B
290 292parallel
Strand 10
B
314 316parallel
Strand 11
B
338 340parallel
Strand 12
B
362 364parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 134first strand
Strand 2
B
155 158parallel
Strand 3
B
179 183parallel
Strand 4
B
203 206parallel
Strand 5
B
226 227parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
251 252first strand
Strand 2
B
273 277parallel
Strand 3
B
297 300parallel
Strand 4
B
321 326parallel
Strand 5
B
345 349parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il