Analysis of interatomic Contacts of Structural Units in PDB entry:
6TMH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6TMH entry

There are 21 chains in PDB entry 6TMH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
i	SER 57	SER 96
A	LYS 53	LYS 564
E	GLU 58	LYS 564
C	GLU 78	LYS 564
B	THR 79	ALA 557
F	ASN 80	GLN 554
D	ASN 80	GLN 554
g	ASP 42	LEU 313
d	PHE 41	PRO 183
e	MET 1	ALA 65
G	GLN 73	TYR 171
H	ALA 96	SER 166
I	ALA 96	SER 166
J	ALA 96	SER 166
K	ALA 96	SER 166
L	ALA 96	SER 166
M	ALA 96	SER 166
N	ALA 96	SER 166
O	ALA 96	SER 166
P	ALA 96	SER 166
Q	ALA 96	SER 166

There are164 helices in PDB entry 6TMH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	i	57	88	Right-handed alpha
Helix 2	AA2	i	92	96	Right-handed 310
Helix 3	AA3	A	55	59	Right-handed 310
Helix 4	AA4	A	62	67	Right-handed alpha
Helix 5	AA5	A	151	155	Right-handed 310
Helix 6	AA6	A	201	208	Right-handed alpha
Helix 7	AA7	A	225	236	Right-handed alpha
Helix 8	AA8	A	237	243	Right-handed alpha
Helix 9	AA9	A	261	275	Right-handed alpha
Helix 10	AB1	A	277	279	Right-handed 310
Helix 11	AB2	A	291	313	Right-handed alpha
Helix 12	AB3	A	322	335	Right-handed alpha
Helix 13	AB4	A	342	346	Right-handed 310
Helix 14	AB5	A	349	359	Right-handed alpha
Helix 15	AB6	A	388	398	Right-handed alpha
Helix 16	AB7	A	426	431	Right-handed 310
Helix 17	AB8	A	432	452	Right-handed alpha
Helix 18	AB9	A	453	462	Right-handed 310
Helix 19	AC1	A	466	480	Right-handed alpha
Helix 20	AC2	A	489	502	Right-handed alpha
Helix 21	AC3	A	509	511	Right-handed 310
Helix 22	AC4	A	512	528	Right-handed alpha
Helix 23	AC5	A	528	539	Right-handed alpha
Helix 24	AC6	A	542	560	Right-handed alpha
Helix 25	AC7	E	59	68	Right-handed alpha
Helix 26	AC8	E	69	74	Right-handed 310
Helix 27	AC9	E	201	208	Right-handed alpha
Helix 28	AD1	E	225	236	Right-handed alpha
Helix 29	AD2	E	236	243	Right-handed alpha
Helix 30	AD3	E	261	275	Right-handed alpha
Helix 31	AD4	E	291	313	Right-handed alpha
Helix 32	AD5	E	322	337	Right-handed alpha
Helix 33	AD6	E	342	346	Right-handed 310
Helix 34	AD7	E	347	348	Right-handed 310
Helix 35	AD8	E	349	359	Right-handed alpha
Helix 36	AD9	E	388	396	Right-handed alpha
Helix 37	AE1	E	405	412	Right-handed alpha
Helix 38	AE2	E	426	431	Right-handed 310
Helix 39	AE3	E	432	453	Right-handed alpha
Helix 40	AE4	E	454	456	Right-handed 310
Helix 41	AE5	E	463	480	Right-handed alpha
Helix 42	AE6	E	489	501	Right-handed alpha
Helix 43	AE7	E	512	525	Right-handed alpha
Helix 44	AE8	E	528	539	Right-handed alpha
Helix 45	AE9	E	542	560	Right-handed alpha
Helix 46	AF1	C	151	155	Right-handed 310
Helix 47	AF2	C	201	208	Right-handed alpha
Helix 48	AF3	C	225	236	Right-handed alpha
Helix 49	AF4	C	236	243	Right-handed alpha
Helix 50	AF5	C	261	274	Right-handed alpha
Helix 51	AF6	C	291	313	Right-handed alpha
Helix 52	AF7	C	322	337	Right-handed alpha
Helix 53	AF8	C	342	346	Right-handed 310
Helix 54	AF9	C	349	359	Right-handed alpha
Helix 55	AG1	C	388	397	Right-handed alpha
Helix 56	AG2	C	405	412	Right-handed alpha
Helix 57	AG3	C	426	431	Right-handed 310
Helix 58	AG4	C	432	459	Right-handed alpha
Helix 59	AG5	C	463	480	Right-handed alpha
Helix 60	AG6	C	489	502	Right-handed alpha
Helix 61	AG7	C	509	511	Right-handed 310
Helix 62	AG8	C	512	527	Right-handed alpha
Helix 63	AG9	C	528	539	Right-handed alpha
Helix 64	AH1	C	542	560	Right-handed alpha
Helix 65	AH2	B	208	215	Right-handed alpha
Helix 66	AH3	B	232	245	Right-handed alpha
Helix 67	AH4	B	260	274	Right-handed alpha
Helix 68	AH5	B	306	325	Right-handed alpha
Helix 69	AH6	B	337	349	Right-handed alpha
Helix 70	AH7	B	350	352	Right-handed 310
Helix 71	AH8	B	364	373	Right-handed alpha
Helix 72	AH9	B	392	395	Right-handed 310
Helix 73	AI1	B	398	406	Right-handed alpha
Helix 74	AI2	B	415	420	Right-handed alpha
Helix 75	AI3	B	443	463	Right-handed alpha
Helix 76	AI4	B	463	470	Right-handed alpha
Helix 77	AI5	B	471	475	Right-handed 310
Helix 78	AI6	B	476	494	Right-handed alpha
Helix 79	AI7	B	500	505	Right-handed alpha
Helix 80	AI8	B	512	526	Right-handed alpha
Helix 81	AI9	B	532	536	Right-handed 310
Helix 82	AJ1	B	541	556	Right-handed alpha
Helix 83	AJ2	F	158	162	Right-handed 310
Helix 84	AJ3	F	208	215	Right-handed alpha
Helix 85	AJ4	F	232	247	Right-handed alpha
Helix 86	AJ5	F	260	274	Right-handed alpha
Helix 87	AJ6	F	311	325	Right-handed alpha
Helix 88	AJ7	F	336	351	Right-handed alpha
Helix 89	AJ8	F	363	373	Right-handed alpha
Helix 90	AJ9	F	391	395	Right-handed 310
Helix 91	AK1	F	398	405	Right-handed alpha
Helix 92	AK2	F	415	420	Right-handed alpha
Helix 93	AK3	F	442	471	Right-handed alpha
Helix 94	AK4	F	476	493	Right-handed alpha
Helix 95	AK5	F	500	505	Right-handed alpha
Helix 96	AK6	F	512	525	Right-handed alpha
Helix 97	AK7	F	526	531	Right-handed 310
Helix 98	AK8	F	541	553	Right-handed alpha
Helix 99	AK9	D	208	215	Right-handed alpha
Helix 100	AL1	D	232	245	Right-handed alpha
Helix 101	AL2	D	260	274	Right-handed alpha
Helix 102	AL3	D	310	325	Right-handed alpha
Helix 103	AL4	D	337	352	Right-handed alpha
Helix 104	AL5	D	365	373	Right-handed alpha
Helix 105	AL6	D	392	395	Right-handed 310
Helix 106	AL7	D	398	406	Right-handed alpha
Helix 107	AL8	D	415	420	Right-handed alpha
Helix 108	AL9	D	443	462	Right-handed alpha
Helix 109	AM1	D	463	470	Right-handed alpha
Helix 110	AM2	D	471	475	Right-handed 310
Helix 111	AM3	D	476	493	Right-handed alpha
Helix 112	AM4	D	500	505	Right-handed alpha
Helix 113	AM5	D	512	526	Right-handed alpha
Helix 114	AM6	D	541	554	Right-handed alpha
Helix 115	AM7	g	43	82	Right-handed alpha
Helix 116	AM8	g	85	94	Right-handed alpha
Helix 117	AM9	g	119	136	Right-handed alpha
Helix 118	AN1	g	148	160	Right-handed alpha
Helix 119	AN2	g	176	190	Right-handed alpha
Helix 120	AN3	g	217	223	Right-handed alpha
Helix 121	AN4	g	226	230	Right-handed 310
Helix 122	AN5	g	237	312	Right-handed alpha
Helix 123	AN6	d	138	140	Right-handed 310
Helix 124	AN7	d	142	157	Right-handed alpha
Helix 125	AN8	d	161	182	Right-handed alpha
Helix 126	AN9	e	8	23	Right-handed alpha
Helix 127	AO1	e	25	35	Right-handed alpha
Helix 128	AO2	e	58	65	Right-handed alpha
Helix 129	AO3	G	74	90	Right-handed alpha
Helix 130	AO4	G	93	111	Right-handed alpha
Helix 131	AO5	G	112	119	Right-handed alpha
Helix 132	AO6	G	123	137	Right-handed alpha
Helix 133	AO7	G	141	154	Right-handed alpha
Helix 134	AO8	G	156	158	Right-handed 310
Helix 135	AO9	G	159	170	Right-handed alpha
Helix 136	AP1	H	97	108	Right-handed alpha
Helix 137	AP2	H	109	131	Right-handed alpha
Helix 138	AP3	H	134	166	Right-handed alpha
Helix 139	AP4	I	97	107	Right-handed alpha
Helix 140	AP5	I	109	131	Right-handed alpha
Helix 141	AP6	I	134	164	Right-handed alpha
Helix 142	AP7	J	97	108	Right-handed alpha
Helix 143	AP8	J	109	131	Right-handed alpha
Helix 144	AP9	J	134	165	Right-handed alpha
Helix 145	AQ1	K	97	106	Right-handed alpha
Helix 146	AQ2	K	109	131	Right-handed alpha
Helix 147	AQ3	K	134	166	Right-handed alpha
Helix 148	AQ4	L	97	107	Right-handed alpha
Helix 149	AQ5	L	112	131	Right-handed alpha
Helix 150	AQ6	L	134	163	Right-handed alpha
Helix 151	AQ7	M	97	131	Right-handed alpha
Helix 152	AQ8	M	136	166	Right-handed alpha
Helix 153	AQ9	N	97	107	Right-handed alpha
Helix 154	AR1	N	109	131	Right-handed alpha
Helix 155	AR2	N	135	165	Right-handed alpha
Helix 156	AR3	O	97	106	Right-handed alpha
Helix 157	AR4	O	108	131	Right-handed alpha
Helix 158	AR5	O	134	165	Right-handed alpha
Helix 159	AR6	P	97	107	Right-handed alpha
Helix 160	AR7	P	107	131	Right-handed alpha
Helix 161	AR8	P	138	165	Right-handed alpha
Helix 162	AR9	Q	97	109	Right-handed alpha
Helix 163	AS1	Q	109	131	Right-handed alpha
Helix 164	AS2	Q	134	166	Right-handed alpha

There are 25 sheets in PDB entry 6TMH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	81	first strand
Strand 2	A	138	141	anti-parallel
Strand 3	A	103	106	anti-parallel
Strand 4	A	111	117	anti-parallel
Strand 5	A	122	126	anti-parallel
Strand 6	A	89	94	anti-parallel
Strand 7	A	80	86	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	150	first strand
Strand 2	A	176	179	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	220	first strand
Strand 2	A	378	380	parallel

Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	286	first strand
Strand 2	A	252	258	parallel
Strand 3	A	315	321	parallel
Strand 4	A	372	377	parallel

Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	138	140	first strand
Strand 2	E	79	86	anti-parallel
Strand 3	E	89	94	anti-parallel
Strand 4	E	121	126	anti-parallel
Strand 5	E	111	117	anti-parallel
Strand 6	E	103	105	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	218	220	first strand
Strand 2	E	378	380	parallel

Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	281	286	first strand
Strand 2	E	251	258	parallel
Strand 3	E	315	321	parallel
Strand 4	E	372	377	parallel

Back to list of sheets
Back to top of page

There are 7 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	81	first strand
Strand 2	C	138	141	anti-parallel
Strand 3	C	103	106	anti-parallel
Strand 4	C	111	116	anti-parallel
Strand 5	C	122	126	anti-parallel
Strand 6	C	89	94	anti-parallel
Strand 7	C	80	86	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	149	first strand
Strand 2	C	177	179	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	401	404	first strand
Strand 2	C	217	220	parallel
Strand 3	C	378	380	parallel

Back to list of sheets
Back to top of page

There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	281	286	first strand
Strand 2	C	251	258	parallel
Strand 3	C	315	321	parallel
Strand 4	C	373	377	parallel

Back to list of sheets
Back to top of page

There are 6 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	88	first strand
Strand 2	B	91	96	anti-parallel
Strand 3	B	128	133	anti-parallel
Strand 4	B	117	123	anti-parallel
Strand 5	B	106	110	anti-parallel
Strand 6	B	145	148	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	156	first strand
Strand 2	B	184	186	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	413	first strand
Strand 2	B	222	227	parallel
Strand 3	B	383	390	parallel
Strand 4	B	330	335	parallel
Strand 5	B	251	256	parallel
Strand 6	B	295	298	parallel

Back to list of sheets
Back to top of page

There are 7 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	81	83	first strand
Strand 2	F	145	148	anti-parallel
Strand 3	F	106	109	anti-parallel
Strand 4	F	117	123	anti-parallel
Strand 5	F	128	133	anti-parallel
Strand 6	F	91	95	anti-parallel
Strand 7	F	83	88	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	154	156	first strand
Strand 2	F	184	186	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	410	413	first strand
Strand 2	F	222	226	parallel
Strand 3	F	383	388	parallel
Strand 4	F	330	334	parallel
Strand 5	F	252	259	parallel
Strand 6	F	295	300	parallel

Back to list of sheets
Back to top of page

There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	279	281	first strand
Strand 2	F	287	289	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	83	first strand
Strand 2	D	145	148	anti-parallel
Strand 3	D	106	109	anti-parallel
Strand 4	D	117	123	anti-parallel
Strand 5	D	128	133	anti-parallel
Strand 6	D	91	96	anti-parallel
Strand 7	D	82	88	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	157	first strand
Strand 2	D	183	186	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	410	413	first strand
Strand 2	D	222	227	parallel
Strand 3	D	383	390	parallel
Strand 4	D	330	335	parallel
Strand 5	D	251	257	parallel
Strand 6	D	295	299	parallel

Back to list of sheets
Back to top of page

There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	207	215	first strand
Strand 2	g	194	204	anti-parallel
Strand 3	g	105	110	parallel
Strand 4	g	142	147	parallel
Strand 5	g	163	167	parallel

Back to list of sheets
Back to top of page

There are 7 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	83	87	first strand
Strand 2	d	111	116	anti-parallel
Strand 3	d	125	131	anti-parallel
Strand 4	d	45	51	parallel
Strand 5	d	60	66	anti-parallel
Strand 6	d	90	96	anti-parallel
Strand 7	d	104	108	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	65	68	first strand
Strand 2	d	73	76	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	40	44	first strand
Strand 2	e	52	56	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6TMH

Analysis of interatomic Contacts of Structural Units in PDB entry:
6TMH