Analysis of interatomic Contacts of Structural Units in PDB entry:
6TMI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TMI entry

There are 5 chains in PDB entry 6TMI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 ALA 52LYS 71
G
 GLN 73LEU 252
A
 SER 20LEU 134
R
 THR 84ILE 133
B
 GLN 321VAL 571
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6TMI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
54 67Right-handed alpha
Helix 2
AA2
G
74 88Right-handed alpha
Helix 3
AA3
G
92 111Right-handed alpha
Helix 4
AA4
G
112 119Right-handed alpha
Helix 5
AA5
G
123 136Right-handed alpha
Helix 6
AA6
G
141 154Right-handed alpha
Helix 7
AA7
G
159 175Right-handed alpha
Helix 8
AA8
G
188 204Right-handed alpha
Helix 9
AA9
G
236 249Right-handed alpha
Helix 10
AB1
A
20 24Right-handed 310
Helix 11
AB2
A
29 31Right-handed 310
Helix 12
AB3
A
32 53Right-handed alpha
Helix 13
AB4
A
63 71Right-handed alpha
Helix 14
AB5
A
75 99Right-handed alpha
Helix 15
AB6
A
110 131Right-handed alpha
Helix 16
AB7
R
95 115Right-handed alpha
Helix 17
AB8
B
324 330Right-handed 310
Helix 18
AB9
B
332 346Right-handed alpha
Helix 19
AC1
B
346 402Right-handed alpha
Helix 20
AC2
B
403 417Right-handed alpha
Helix 21
AC3
B
425 439Right-handed alpha
Helix 22
AC4
B
453 471Right-handed alpha
Helix 23
AC5
B
476 487Right-handed alpha
Helix 24
AC6
B
487 492Right-handed alpha
Helix 25
AC7
B
505 521Right-handed alpha
Helix 26
AC8
B
526 530Right-handed 310
Helix 27
AC9
B
537 539Right-handed 310
Helix 28
AD1
B
540 569Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6TMI.

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
207 210first strand
Strand 2
G
176 181parallel
Strand 3
G
224 225anti-parallel
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