Analysis of interatomic Contacts of Structural Units in PDB entry:
6TMR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TMR entry

There is 1 chain in PDB entry 6TMR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1SER 401
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 6TMR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 22Right-handed 310
Helix 2
AA2
A
28 32Right-handed 310
Helix 3
AA3
A
90 103Right-handed alpha
Helix 4
AA4
A
262 293Right-handed alpha
Helix 5
AA5
A
297 305Right-handed 310
Helix 6
AA6
A
334 338Right-handed 310
Helix 7
AA7
A
373 378Right-handed alpha
Helix 8
AA8
A
379 391Right-handed alpha
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There are 7 sheets in PDB entry 6TMR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 8first strand
Strand 2
A
321 332anti-parallel
Strand 3
A
15 17anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 8first strand
Strand 2
A
321 332anti-parallel
Strand 3
A
310 318anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 218first strand
Strand 2
A
205 210anti-parallel
Strand 3
A
192 202anti-parallel
Strand 4
A
37 46anti-parallel
Strand 5
A
240 242anti-parallel
Strand 6
A
230 234anti-parallel
Strand 7
A
223 227anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
140 143anti-parallel
Strand 3
A
148 150anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 87first strand
Strand 2
A
58 72anti-parallel
Strand 3
A
133 137anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 130first strand
Strand 2
A
58 72anti-parallel
Strand 3
A
176 180anti-parallel
Strand 4
A
169 170anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 365first strand
Strand 2
A
371 372anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il