Analysis of interatomic Contacts of Structural Units in PDB entry:
6TMT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6TMT entry

There are 3 chains in PDB entry 6TMT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	LYS 551
B	SER 2	LYS 551
C	SER 2	PHE 217

There are176 helices in PDB entry 6TMT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	28	Right-handed alpha
Helix 2	AA2	A	29	31	Right-handed 310
Helix 3	AA3	A	51	59	Right-handed alpha
Helix 4	AA4	A	63	82	Right-handed alpha
Helix 5	AA5	A	88	105	Right-handed alpha
Helix 6	AA6	A	109	129	Right-handed alpha
Helix 7	AA7	A	137	147	Right-handed alpha
Helix 8	AA8	A	150	163	Right-handed alpha
Helix 9	AA9	A	197	201	Right-handed 310
Helix 10	AB1	A	224	226	Right-handed 310
Helix 11	AB2	A	227	241	Right-handed alpha
Helix 12	AB3	A	258	272	Right-handed alpha
Helix 13	AB4	A	273	276	Right-handed 310
Helix 14	AB5	A	296	307	Right-handed alpha
Helix 15	AB6	A	314	318	Right-handed 310
Helix 16	AB7	A	345	365	Right-handed alpha
Helix 17	AB8	A	369	372	Right-handed 310
Helix 18	AB9	A	373	387	Right-handed alpha
Helix 19	AC1	A	399	424	Right-handed alpha
Helix 20	AC2	A	430	447	Right-handed alpha
Helix 21	AC3	A	450	458	Right-handed alpha
Helix 22	AC4	A	462	472	Right-handed alpha
Helix 23	AC5	A	472	480	Right-handed alpha
Helix 24	AC6	A	482	487	Right-handed alpha
Helix 25	AC7	A	494	500	Right-handed alpha
Helix 26	AC8	A	513	518	Right-handed alpha
Helix 27	AC9	A	523	542	Right-handed alpha
Helix 28	AD1	B	9	29	Right-handed alpha
Helix 29	AD2	B	51	59	Right-handed alpha
Helix 30	AD3	B	63	82	Right-handed alpha
Helix 31	AD4	B	88	105	Right-handed alpha
Helix 32	AD5	B	109	129	Right-handed alpha
Helix 33	AD6	B	137	147	Right-handed alpha
Helix 34	AD7	B	150	164	Right-handed alpha
Helix 35	AD8	B	197	201	Right-handed 310
Helix 36	AD9	B	224	226	Right-handed 310
Helix 37	AE1	B	227	241	Right-handed alpha
Helix 38	AE2	B	258	272	Right-handed alpha
Helix 39	AE3	B	273	276	Right-handed 310
Helix 40	AE4	B	296	306	Right-handed alpha
Helix 41	AE5	B	313	318	Right-handed 310
Helix 42	AE6	B	345	365	Right-handed alpha
Helix 43	AE7	B	369	372	Right-handed 310
Helix 44	AE8	B	373	387	Right-handed alpha
Helix 45	AE9	B	399	424	Right-handed alpha
Helix 46	AF1	B	430	447	Right-handed alpha
Helix 47	AF2	B	450	458	Right-handed alpha
Helix 48	AF3	B	462	480	Right-handed alpha
Helix 49	AF4	B	482	487	Right-handed alpha
Helix 50	AF5	B	494	500	Right-handed alpha
Helix 51	AF6	B	513	518	Right-handed alpha
Helix 52	AF7	B	523	542	Right-handed alpha
Helix 53	AF8	C	9	29	Right-handed alpha
Helix 54	AF9	C	51	59	Right-handed alpha
Helix 55	AG1	C	63	82	Right-handed alpha
Helix 56	AG2	C	88	105	Right-handed alpha
Helix 57	AG3	C	109	129	Right-handed alpha
Helix 58	AG4	C	137	147	Right-handed alpha
Helix 59	AG5	C	150	163	Right-handed alpha
Helix 60	AG6	C	197	201	Right-handed 310
Helix 61	AG7	C	224	226	Right-handed 310
Helix 62	AG8	C	227	241	Right-handed alpha
Helix 63	AG9	C	258	272	Right-handed alpha
Helix 64	AH1	C	273	276	Right-handed 310
Helix 65	AH2	C	296	306	Right-handed alpha
Helix 66	AH3	C	313	318	Right-handed 310
Helix 67	AH4	C	345	365	Right-handed alpha
Helix 68	AH5	C	369	372	Right-handed 310
Helix 69	AH6	C	373	387	Right-handed alpha
Helix 70	AH7	C	399	424	Right-handed alpha
Helix 71	AH8	C	431	447	Right-handed alpha
Helix 72	AH9	C	450	458	Right-handed alpha
Helix 73	AI1	C	462	480	Right-handed alpha
Helix 74	AI2	C	482	487	Right-handed alpha
Helix 75	AI3	C	494	500	Right-handed alpha
Helix 76	AI4	C	513	518	Right-handed alpha
Helix 77	AI5	C	523	542	Right-handed alpha
Helix 78	AI6	D	9	29	Right-handed alpha
Helix 79	AI7	D	51	59	Right-handed alpha
Helix 80	AI8	D	63	82	Right-handed alpha
Helix 81	AI9	D	88	105	Right-handed alpha
Helix 82	AJ1	D	109	129	Right-handed alpha
Helix 83	AJ2	D	137	147	Right-handed alpha
Helix 84	AJ3	D	150	163	Right-handed alpha
Helix 85	AJ4	D	197	201	Right-handed 310
Helix 86	AJ5	D	224	226	Right-handed 310
Helix 87	AJ6	D	227	241	Right-handed alpha
Helix 88	AJ7	D	258	272	Right-handed alpha
Helix 89	AJ8	D	273	276	Right-handed 310
Helix 90	AJ9	D	296	306	Right-handed alpha
Helix 91	AK1	D	313	318	Right-handed 310
Helix 92	AK2	D	345	365	Right-handed alpha
Helix 93	AK3	D	369	372	Right-handed 310
Helix 94	AK4	D	373	387	Right-handed alpha
Helix 95	AK5	D	399	424	Right-handed alpha
Helix 96	AK6	D	431	447	Right-handed alpha
Helix 97	AK7	D	450	458	Right-handed alpha
Helix 98	AK8	D	462	472	Right-handed alpha
Helix 99	AK9	D	472	480	Right-handed alpha
Helix 100	AL1	D	482	487	Right-handed alpha
Helix 101	AL2	D	494	500	Right-handed alpha
Helix 102	AL3	D	513	518	Right-handed alpha
Helix 103	AL4	D	523	542	Right-handed alpha
Helix 104	AL5	E	9	29	Right-handed alpha
Helix 105	AL6	E	51	59	Right-handed alpha
Helix 106	AL7	E	63	82	Right-handed alpha
Helix 107	AL8	E	88	105	Right-handed alpha
Helix 108	AL9	E	109	129	Right-handed alpha
Helix 109	AM1	E	137	147	Right-handed alpha
Helix 110	AM2	E	152	164	Right-handed alpha
Helix 111	AM3	E	197	201	Right-handed 310
Helix 112	AM4	E	224	226	Right-handed 310
Helix 113	AM5	E	227	241	Right-handed alpha
Helix 114	AM6	E	258	272	Right-handed alpha
Helix 115	AM7	E	273	276	Right-handed 310
Helix 116	AM8	E	296	306	Right-handed alpha
Helix 117	AM9	E	313	318	Right-handed 310
Helix 118	AN1	E	345	365	Right-handed alpha
Helix 119	AN2	E	369	372	Right-handed 310
Helix 120	AN3	E	373	387	Right-handed alpha
Helix 121	AN4	E	399	424	Right-handed alpha
Helix 122	AN5	E	430	447	Right-handed alpha
Helix 123	AN6	E	450	458	Right-handed alpha
Helix 124	AN7	E	462	480	Right-handed alpha
Helix 125	AN8	E	494	500	Right-handed alpha
Helix 126	AN9	E	513	518	Right-handed alpha
Helix 127	AO1	E	523	542	Right-handed alpha
Helix 128	AO2	F	9	29	Right-handed alpha
Helix 129	AO3	F	51	59	Right-handed alpha
Helix 130	AO4	F	63	82	Right-handed alpha
Helix 131	AO5	F	88	105	Right-handed alpha
Helix 132	AO6	F	109	129	Right-handed alpha
Helix 133	AO7	F	137	147	Right-handed alpha
Helix 134	AO8	F	150	164	Right-handed alpha
Helix 135	AO9	F	197	201	Right-handed 310
Helix 136	AP1	F	224	226	Right-handed 310
Helix 137	AP2	F	227	241	Right-handed alpha
Helix 138	AP3	F	258	272	Right-handed alpha
Helix 139	AP4	F	296	306	Right-handed alpha
Helix 140	AP5	F	313	318	Right-handed 310
Helix 141	AP6	F	345	365	Right-handed alpha
Helix 142	AP7	F	369	372	Right-handed 310
Helix 143	AP8	F	373	387	Right-handed alpha
Helix 144	AP9	F	399	424	Right-handed alpha
Helix 145	AQ1	F	431	447	Right-handed alpha
Helix 146	AQ2	F	450	458	Right-handed alpha
Helix 147	AQ3	F	462	480	Right-handed alpha
Helix 148	AQ4	F	482	487	Right-handed alpha
Helix 149	AQ5	F	494	500	Right-handed alpha
Helix 150	AQ6	F	513	518	Right-handed alpha
Helix 151	AQ7	F	523	542	Right-handed alpha
Helix 152	AQ8	G	9	29	Right-handed alpha
Helix 153	AQ9	G	51	59	Right-handed alpha
Helix 154	AR1	G	63	82	Right-handed alpha
Helix 155	AR2	G	88	105	Right-handed alpha
Helix 156	AR3	G	107	129	Right-handed alpha
Helix 157	AR4	G	137	147	Right-handed alpha
Helix 158	AR5	G	150	164	Right-handed alpha
Helix 159	AR6	G	197	201	Right-handed 310
Helix 160	AR7	G	224	226	Right-handed 310
Helix 161	AR8	G	227	241	Right-handed alpha
Helix 162	AR9	G	258	272	Right-handed alpha
Helix 163	AS1	G	273	276	Right-handed 310
Helix 164	AS2	G	296	306	Right-handed alpha
Helix 165	AS3	G	314	318	Right-handed 310
Helix 166	AS4	G	345	365	Right-handed alpha
Helix 167	AS5	G	369	372	Right-handed 310
Helix 168	AS6	G	373	387	Right-handed alpha
Helix 169	AS7	G	399	424	Right-handed alpha
Helix 170	AS8	G	430	447	Right-handed alpha
Helix 171	AS9	G	450	458	Right-handed alpha
Helix 172	AT1	G	462	480	Right-handed alpha
Helix 173	AT2	G	482	487	Right-handed alpha
Helix 174	AT3	G	494	500	Right-handed alpha
Helix 175	AT4	G	513	518	Right-handed alpha
Helix 176	AT5	G	523	542	Right-handed alpha

There are 42 sheets in PDB entry 6TMT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	8	first strand
Strand 2	A	543	547	anti-parallel
Strand 3	B	37	41	parallel
Strand 4	B	46	49	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	49	first strand
Strand 2	A	37	41	anti-parallel
Strand 3	G	543	547	parallel
Strand 4	G	6	8	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	175	first strand
Strand 2	A	390	395	parallel
Strand 3	A	182	185	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	191	first strand
Strand 2	A	339	343	anti-parallel
Strand 3	A	331	334	anti-parallel
Strand 4	A	209	210	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	195	first strand
Strand 2	A	283	287	anti-parallel
Strand 3	A	250	253	parallel
Strand 4	A	215	219	parallel
Strand 5	A	310	311	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	427	first strand
Strand 2	A	520	522	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	503	504	first strand
Strand 2	A	511	512	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	8	first strand
Strand 2	B	543	547	anti-parallel
Strand 3	C	37	42	parallel
Strand 4	C	45	49	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	175	first strand
Strand 2	B	390	395	parallel
Strand 3	B	182	185	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	191	first strand
Strand 2	B	339	343	anti-parallel
Strand 3	B	331	333	anti-parallel
Strand 4	B	210	211	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	195	first strand
Strand 2	B	283	287	anti-parallel
Strand 3	B	250	253	parallel
Strand 4	B	215	219	parallel
Strand 5	B	310	311	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	425	427	first strand
Strand 2	B	520	522	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	503	504	first strand
Strand 2	B	511	512	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	8	first strand
Strand 2	C	543	547	anti-parallel
Strand 3	D	37	41	parallel
Strand 4	D	46	49	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	175	first strand
Strand 2	C	390	395	parallel
Strand 3	C	182	185	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	189	191	first strand
Strand 2	C	339	343	anti-parallel
Strand 3	C	331	334	anti-parallel
Strand 4	C	209	211	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	195	first strand
Strand 2	C	283	287	anti-parallel
Strand 3	C	250	253	parallel
Strand 4	C	215	219	parallel
Strand 5	C	310	311	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	425	427	first strand
Strand 2	C	520	522	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	503	504	first strand
Strand 2	C	511	512	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	8	first strand
Strand 2	D	543	547	anti-parallel
Strand 3	E	37	42	parallel
Strand 4	E	45	49	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	170	175	first strand
Strand 2	D	390	395	parallel
Strand 3	D	182	185	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	189	191	first strand
Strand 2	D	339	343	anti-parallel
Strand 3	D	331	333	anti-parallel
Strand 4	D	210	211	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	195	first strand
Strand 2	D	283	287	anti-parallel
Strand 3	D	250	253	parallel
Strand 4	D	215	219	parallel
Strand 5	D	310	311	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	425	427	first strand
Strand 2	D	520	522	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	503	504	first strand
Strand 2	D	511	512	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	8	first strand
Strand 2	E	543	547	anti-parallel
Strand 3	F	37	41	parallel
Strand 4	F	46	49	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	170	175	first strand
Strand 2	E	390	395	parallel
Strand 3	E	182	185	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	189	191	first strand
Strand 2	E	339	343	anti-parallel
Strand 3	E	331	334	anti-parallel
Strand 4	E	209	211	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	194	195	first strand
Strand 2	E	283	287	anti-parallel
Strand 3	E	250	253	parallel
Strand 4	E	215	219	parallel
Strand 5	E	310	311	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	425	427	first strand
Strand 2	E	520	522	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	503	504	first strand
Strand 2	E	511	512	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	8	first strand
Strand 2	F	543	547	anti-parallel
Strand 3	G	37	42	parallel
Strand 4	G	45	49	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	170	175	first strand
Strand 2	F	390	395	parallel
Strand 3	F	182	185	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	189	191	first strand
Strand 2	F	339	343	anti-parallel
Strand 3	F	331	333	anti-parallel
Strand 4	F	210	211	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	194	195	first strand
Strand 2	F	283	287	anti-parallel
Strand 3	F	250	253	parallel
Strand 4	F	215	219	parallel
Strand 5	F	310	311	parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	425	427	first strand
Strand 2	F	520	522	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	503	504	first strand
Strand 2	F	511	512	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	170	175	first strand
Strand 2	G	390	395	parallel
Strand 3	G	182	185	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	189	191	first strand
Strand 2	G	339	343	anti-parallel
Strand 3	G	331	334	anti-parallel
Strand 4	G	209	211	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	194	195	first strand
Strand 2	G	283	287	anti-parallel
Strand 3	G	250	253	parallel
Strand 4	G	215	219	parallel
Strand 5	G	310	311	parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	425	427	first strand
Strand 2	G	520	522	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	503	504	first strand
Strand 2	G	511	512	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6TMT

Analysis of interatomic Contacts of Structural Units in PDB entry:
6TMT