Analysis of interatomic Contacts of Structural Units in PDB entry:
6TNF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TNF entry

There are 3 chains in PDB entry 6TNF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 48HIS 1379
B
 GLU 107LEU 1284
C
 MET 1GLY 76
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are115 helices in PDB entry 6TNF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 54Right-handed alpha
Helix 2
AA2
A
75 84Right-handed alpha
Helix 3
AA3
A
92 104Right-handed alpha
Helix 4
AA4
A
105 108Right-handed 310
Helix 5
AA5
A
109 114Right-handed alpha
Helix 6
AA6
A
147 160Right-handed alpha
Helix 7
AA7
A
175 182Right-handed alpha
Helix 8
AA8
A
191 202Right-handed alpha
Helix 9
AA9
A
207 218Right-handed alpha
Helix 10
AB1
A
226 238Right-handed alpha
Helix 11
AB2
A
244 255Right-handed alpha
Helix 12
AB3
A
260 270Right-handed alpha
Helix 13
AB4
A
279 291Right-handed alpha
Helix 14
AB5
A
296 308Right-handed alpha
Helix 15
AB6
A
342 356Right-handed alpha
Helix 16
AB7
A
361 372Right-handed alpha
Helix 17
AB8
A
381 391Right-handed alpha
Helix 18
AB9
A
399 407Right-handed alpha
Helix 19
AC1
A
407 412Right-handed alpha
Helix 20
AC2
A
419 427Right-handed alpha
Helix 21
AC3
A
428 433Right-handed alpha
Helix 22
AC4
A
434 446Right-handed alpha
Helix 23
AC5
A
450 468Right-handed alpha
Helix 24
AC6
A
472 477Right-handed alpha
Helix 25
AC7
A
478 483Right-handed alpha
Helix 26
AC8
A
488 506Right-handed alpha
Helix 27
AC9
A
513 520Right-handed alpha
Helix 28
AD1
A
531 544Right-handed alpha
Helix 29
AD2
A
550 565Right-handed alpha
Helix 30
AD3
A
571 588Right-handed alpha
Helix 31
AD4
A
607 620Right-handed alpha
Helix 32
AD5
A
621 626Right-handed alpha
Helix 33
AD6
A
626 643Right-handed alpha
Helix 34
AD7
A
664 669Right-handed alpha
Helix 35
AD8
A
727 732Right-handed alpha
Helix 36
AD9
A
733 747Right-handed alpha
Helix 37
AE1
A
755 760Right-handed alpha
Helix 38
AE2
A
781 803Right-handed alpha
Helix 39
AE3
A
809 835Right-handed alpha
Helix 40
AE4
A
931 936Right-handed alpha
Helix 41
AE5
A
968 979Right-handed alpha
Helix 42
AE6
A
1002 1006Right-handed 310
Helix 43
AE7
A
1007 1016Right-handed alpha
Helix 44
AE8
A
1019 1033Right-handed alpha
Helix 45
AE9
A
1046 1051Right-handed alpha
Helix 46
AF1
A
1051 1069Right-handed alpha
Helix 47
AF2
A
1079 1087Right-handed alpha
Helix 48
AF3
A
1088 1092Right-handed 310
Helix 49
AF4
A
1105 1116Right-handed alpha
Helix 50
AF5
A
1117 1123Right-handed 310
Helix 51
AF6
A
1126 1140Right-handed alpha
Helix 52
AF7
A
1149 1163Right-handed alpha
Helix 53
AF8
A
1178 1193Right-handed alpha
Helix 54
AF9
A
1195 1208Right-handed alpha
Helix 55
AG1
A
1230 1249Right-handed alpha
Helix 56
AG2
A
1259 1283Right-handed alpha
Helix 57
AG3
A
1287 1303Right-handed alpha
Helix 58
AG4
A
1309 1314Right-handed alpha
Helix 59
AG5
A
1323 1339Right-handed alpha
Helix 60
AG6
A
1356 1373Right-handed alpha
Helix 61
AG7
B
110 115Right-handed alpha
Helix 62
AG8
B
128 133Right-handed 310
Helix 63
AG9
B
158 164Right-handed alpha
Helix 64
AH1
B
165 167Right-handed 310
Helix 65
AH2
B
173 184Right-handed alpha
Helix 66
AH3
B
188 198Right-handed alpha
Helix 67
AH4
B
216 221Right-handed alpha
Helix 68
AH5
B
227 238Right-handed alpha
Helix 69
AH6
B
261 282Right-handed alpha
Helix 70
AH7
B
286 294Right-handed alpha
Helix 71
AH8
B
300 305Right-handed alpha
Helix 72
AH9
B
310 322Right-handed alpha
Helix 73
AI1
B
324 346Right-handed alpha
Helix 74
AI2
B
356 361Right-handed 310
Helix 75
AI3
B
362 376Right-handed alpha
Helix 76
AI4
B
385 390Right-handed alpha
Helix 77
AI5
B
416 434Right-handed alpha
Helix 78
AI6
B
438 443Right-handed alpha
Helix 79
AI7
B
447 452Right-handed alpha
Helix 80
AI8
B
458 472Right-handed alpha
Helix 81
AI9
B
486 491Right-handed alpha
Helix 82
AJ1
B
494 513Right-handed alpha
Helix 83
AJ2
B
515 527Right-handed alpha
Helix 84
AJ3
B
534 549Right-handed alpha
Helix 85
AJ4
B
584 593Right-handed alpha
Helix 86
AJ5
B
594 597Right-handed 310
Helix 87
AJ6
B
602 615Right-handed alpha
Helix 88
AJ7
B
621 637Right-handed alpha
Helix 89
AJ8
B
648 652Right-handed 310
Helix 90
AJ9
B
653 657Right-handed 310
Helix 91
AK1
B
665 685Right-handed alpha
Helix 92
AK2
B
696 717Right-handed alpha
Helix 93
AK3
B
738 764Right-handed alpha
Helix 94
AK4
B
767 787Right-handed alpha
Helix 95
AK5
B
817 822Right-handed alpha
Helix 96
AK6
B
828 836Right-handed alpha
Helix 97
AK7
B
840 858Right-handed alpha
Helix 98
AK8
B
869 890Right-handed alpha
Helix 99
AK9
B
907 923Right-handed alpha
Helix 100
AL1
B
928 938Right-handed alpha
Helix 101
AL2
B
945 971Right-handed alpha
Helix 102
AL3
B
978 993Right-handed alpha
Helix 103
AL4
B
998 1014Right-handed alpha
Helix 104
AL5
B
1022 1036Right-handed alpha
Helix 105
AL6
B
1039 1048Right-handed alpha
Helix 106
AL7
B
1071 1076Right-handed alpha
Helix 107
AL8
B
1079 1102Right-handed alpha
Helix 108
AL9
B
1124 1147Right-handed alpha
Helix 109
AM1
B
1156 1183Right-handed alpha
Helix 110
AM2
B
1187 1203Right-handed alpha
Helix 111
AM3
B
1204 1213Right-handed alpha
Helix 112
AM4
B
1254 1258Right-handed 310
Helix 113
AM5
B
1260 1273Right-handed alpha
Helix 114
AM6
B
1277 1282Right-handed alpha
Helix 115
AM7
C
24 34Right-handed alpha
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There are 2 sheets in PDB entry 6TNF. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
684 687first strand
Strand 2
A
764 765anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
44 45first strand
Strand 2
C
48 49anti-parallel
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