Analysis of interatomic Contacts of Structural Units in PDB entry:
6TNJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TNJ entry

There is 1 chain in PDB entry 6TNJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 138PHE 433
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 6TNJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
152 158Right-handed 310
Helix 2
AA2
A
159 178Right-handed alpha
Helix 3
AA3
A
180 184Right-handed 310
Helix 4
AA4
A
207 217Right-handed alpha
Helix 5
AA5
A
225 238Right-handed alpha
Helix 6
AA6
A
265 267Right-handed 310
Helix 7
AA7
A
278 290Right-handed alpha
Helix 8
AA8
A
290 295Right-handed alpha
Helix 9
AA9
A
320 324Right-handed 310
Helix 10
AB1
A
356 371Right-handed alpha
Helix 11
AB2
A
385 394Right-handed alpha
Helix 12
AB3
A
398 400Right-handed 310
Helix 13
AB4
A
409 425Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6TNJ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 205first strand
Strand 2
A
187 194anti-parallel
Strand 3
A
143 150parallel
Strand 4
A
244 251parallel
Strand 5
A
374 380parallel
Strand 6
A
402 405parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 270first strand
Strand 2
A
313 315anti-parallel
Strand 3
A
353 355parallel
Strand 4
A
343 344anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il