Analysis of interatomic Contacts of Structural Units in PDB entry:
6TNM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TNM entry

There is 1 chain in PDB entry 6TNM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 719
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 6TNM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 47Right-handed alpha
Helix 2
AA2
A
69 71Right-handed 310
Helix 3
AA3
A
72 77Right-handed alpha
Helix 4
AA4
A
80 100Right-handed alpha
Helix 5
AA5
A
115 124Right-handed alpha
Helix 6
AA6
A
139 143Right-handed 310
Helix 7
AA7
A
149 159Right-handed alpha
Helix 8
AA8
A
159 170Right-handed alpha
Helix 9
AA9
A
175 182Right-handed alpha
Helix 10
AB1
A
189 206Right-handed alpha
Helix 11
AB2
A
210 216Right-handed alpha
Helix 12
AB3
A
217 220Right-handed 310
Helix 13
AB4
A
225 242Right-handed alpha
Helix 14
AB5
A
248 261Right-handed alpha
Helix 15
AB6
A
265 283Right-handed alpha
Helix 16
AB7
A
283 307Right-handed alpha
Helix 17
AB8
A
322 334Right-handed alpha
Helix 18
AB9
A
345 366Right-handed alpha
Helix 19
AC1
A
370 379Right-handed alpha
Helix 20
AC2
A
389 393Right-handed 310
Helix 21
AC3
A
403 417Right-handed alpha
Helix 22
AC4
A
432 437Right-handed alpha
Helix 23
AC5
A
438 440Right-handed 310
Helix 24
AC6
A
442 444Right-handed 310
Helix 25
AC7
A
470 484Right-handed alpha
Helix 26
AC8
A
498 516Right-handed alpha
Helix 27
AC9
A
519 530Right-handed alpha
Helix 28
AD1
A
536 545Right-handed alpha
Helix 29
AD2
A
545 560Right-handed alpha
Helix 30
AD3
A
570 578Right-handed alpha
Helix 31
AD4
A
606 616Right-handed alpha
Helix 32
AD5
A
623 645Right-handed alpha
Helix 33
AD6
A
650 662Right-handed alpha
Helix 34
AD7
A
665 669Right-handed 310
Helix 35
AD8
A
670 678Right-handed alpha
Helix 36
AD9
A
679 689Right-handed alpha
Helix 37
AE1
A
694 698Right-handed 310
Helix 38
AE2
A
700 707Right-handed alpha
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There are 4 sheets in PDB entry 6TNM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 4first strand
Strand 2
A
8 13anti-parallel
Strand 3
A
17 22anti-parallel
Strand 4
A
54 59parallel
Strand 5
A
105 109parallel
Strand 6
A
126 129parallel
Strand 7
A
186 187parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 114first strand
Strand 2
A
134 136parallel
Strand 3
A
172 174anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 384first strand
Strand 2
A
339 342parallel
Strand 3
A
316 319parallel
Strand 4
A
395 398parallel
Strand 5
A
423 426parallel
Strand 6
A
446 450parallel
Strand 7
A
460 465anti-parallel
Strand 8
A
487 492parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
591 593first strand
Strand 2
A
601 603anti-parallel
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