Analysis of interatomic Contacts of Structural Units in PDB entry:
6TNY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6TNY entry

There are 9 chains in PDB entry 6TNY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 78	TRP 1107
B	MET 1	LEU 462
C	ALA 2	ALA 144
D	GLU 42	LEU 107
E	MET 1	ILE 255
F	MET 1	ILE 255
G	MET 1	ILE 255
P	C 3	G 24
T	T -3	G 23

There are 65 helices in PDB entry 6TNY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	160	169	Right-handed alpha
Helix 2	AA2	A	173	177	Right-handed 310
Helix 3	AA3	A	216	218	Right-handed 310
Helix 4	AA4	A	219	228	Right-handed alpha
Helix 5	AA5	A	249	259	Right-handed alpha
Helix 6	AA6	A	301	306	Right-handed 310
Helix 7	AA7	A	373	389	Right-handed alpha
Helix 8	AA8	A	401	413	Right-handed alpha
Helix 9	AA9	A	459	467	Right-handed alpha
Helix 10	AB1	A	473	482	Right-handed alpha
Helix 11	AB2	A	493	499	Right-handed alpha
Helix 12	AB3	A	501	526	Right-handed alpha
Helix 13	AB4	A	527	540	Right-handed alpha
Helix 14	AB5	A	544	548	Right-handed 310
Helix 15	AB6	A	551	564	Right-handed alpha
Helix 16	AB7	A	605	614	Right-handed alpha
Helix 17	AB8	A	617	619	Right-handed 310
Helix 18	AB9	A	655	675	Right-handed alpha
Helix 19	AC1	A	679	705	Right-handed alpha
Helix 20	AC2	A	713	739	Right-handed alpha
Helix 21	AC3	A	767	783	Right-handed alpha
Helix 22	AC4	A	837	853	Right-handed alpha
Helix 23	AC5	A	856	873	Right-handed alpha
Helix 24	AC6	A	898	906	Right-handed alpha
Helix 25	AC7	A	941	949	Right-handed alpha
Helix 26	AC8	A	953	960	Right-handed alpha
Helix 27	AC9	A	962	971	Right-handed alpha
Helix 28	AD1	A	976	990	Right-handed alpha
Helix 29	AD2	A	1001	1005	Right-handed 310
Helix 30	AD3	A	1033	1056	Right-handed alpha
Helix 31	AD4	A	1056	1063	Right-handed alpha
Helix 32	AD5	A	1077	1096	Right-handed alpha
Helix 33	AD6	B	4	8	Right-handed 310
Helix 34	AD7	B	36	40	Right-handed 310
Helix 35	AD8	B	50	74	Right-handed alpha
Helix 36	AD9	B	209	223	Right-handed alpha
Helix 37	AE1	B	228	236	Right-handed alpha
Helix 38	AE2	B	272	288	Right-handed alpha
Helix 39	AE3	B	312	316	Right-handed 310
Helix 40	AE4	B	318	322	Right-handed 310
Helix 41	AE5	B	347	355	Right-handed alpha
Helix 42	AE6	B	360	371	Right-handed alpha
Helix 43	AE7	C	3	15	Right-handed alpha
Helix 44	AE8	C	24	30	Right-handed alpha
Helix 45	AE9	C	33	52	Right-handed alpha
Helix 46	AF1	C	84	92	Right-handed alpha
Helix 47	AF2	C	112	124	Right-handed alpha
Helix 48	AF3	D	44	53	Right-handed alpha
Helix 49	AF4	D	65	77	Right-handed alpha
Helix 50	AF5	E	9	18	Right-handed alpha
Helix 51	AF6	E	55	57	Right-handed 310
Helix 52	AF7	E	72	80	Right-handed alpha
Helix 53	AF8	E	141	153	Right-handed alpha
Helix 54	AF9	E	209	216	Right-handed alpha
Helix 55	AG1	E	217	222	Right-handed 310
Helix 56	AG2	F	8	20	Right-handed alpha
Helix 57	AG3	F	72	79	Right-handed alpha
Helix 58	AG4	F	141	152	Right-handed alpha
Helix 59	AG5	F	209	216	Right-handed alpha
Helix 60	AG6	F	217	222	Right-handed 310
Helix 61	AG7	G	8	20	Right-handed alpha
Helix 62	AG8	G	72	79	Right-handed alpha
Helix 63	AG9	G	141	155	Right-handed alpha
Helix 64	AH1	G	209	216	Right-handed alpha
Helix 65	AH2	G	217	222	Right-handed 310

There are 20 sheets in PDB entry 6TNY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	291	first strand
Strand 2	A	136	142	parallel
Strand 3	A	123	131	anti-parallel
Strand 4	A	94	105	anti-parallel
Strand 5	A	265	268	anti-parallel
Strand 6	A	296	298	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	151	first strand
Strand 2	A	207	213	anti-parallel
Strand 3	A	192	195	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	370	first strand
Strand 2	A	351	356	parallel
Strand 3	A	334	343	anti-parallel
Strand 4	A	311	319	anti-parallel
Strand 5	A	392	395	parallel
Strand 6	A	455	458	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	431	438	first strand
Strand 2	A	442	449	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	592	594	first strand
Strand 2	A	792	805	anti-parallel
Strand 3	A	598	603	anti-parallel
Strand 4	A	758	762	anti-parallel
Strand 5	A	750	754	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	592	594	first strand
Strand 2	A	792	805	anti-parallel
Strand 3	A	808	814	anti-parallel
Strand 4	A	824	827	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	621	622	first strand
Strand 2	A	645	647	anti-parallel
Strand 3	A	637	639	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	883	886	first strand
Strand 2	A	921	926	anti-parallel
Strand 3	A	939	940	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	992	993	first strand
Strand 2	F	120	121	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	143	first strand
Strand 2	B	132	136	anti-parallel
Strand 3	B	91	100	anti-parallel
Strand 4	B	158	165	anti-parallel
Strand 5	B	171	177	anti-parallel
Strand 6	B	145	146	parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	327	first strand
Strand 2	B	292	295	parallel
Strand 3	B	238	244	parallel
Strand 4	B	195	199	parallel
Strand 5	B	436	441	anti-parallel
Strand 6	B	447	454	anti-parallel
Strand 7	C	73	80	parallel
Strand 8	C	58	68	anti-parallel
Strand 9	C	97	104	anti-parallel
Strand 10	C	21	22	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	332	336	first strand
Strand 2	B	339	343	anti-parallel
Strand 3	B	401	403	parallel
Strand 4	B	422	427	parallel
Strand 5	B	411	416	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	61	first strand
Strand 2	E	2	6	anti-parallel
Strand 3	E	87	92	anti-parallel
Strand 4	E	98	104	anti-parallel
Strand 5	E	112	117	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	66	71	first strand
Strand 2	E	25	31	anti-parallel
Strand 3	E	34	40	anti-parallel
Strand 4	E	46	53	anti-parallel
Strand 5	E	245	251	anti-parallel
Strand 6	E	235	241	anti-parallel
Strand 7	E	224	229	anti-parallel
Strand 8	E	135	140	anti-parallel
Strand 9	E	196	199	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	178	183	first strand
Strand 2	E	166	171	anti-parallel
Strand 3	E	157	162	anti-parallel
Strand 4	E	203	208	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	62	first strand
Strand 2	F	2	6	anti-parallel
Strand 3	F	87	92	anti-parallel
Strand 4	F	98	104	anti-parallel
Strand 5	F	110	117	anti-parallel
Strand 6	G	176	183	anti-parallel
Strand 7	G	166	173	anti-parallel
Strand 8	G	157	162	anti-parallel
Strand 9	G	204	208	anti-parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	68	71	first strand
Strand 2	F	25	30	anti-parallel
Strand 3	F	34	40	anti-parallel
Strand 4	F	47	53	anti-parallel
Strand 5	F	245	251	anti-parallel
Strand 6	F	235	241	anti-parallel
Strand 7	F	224	229	anti-parallel
Strand 8	F	135	140	anti-parallel
Strand 9	F	196	199	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	178	183	first strand
Strand 2	F	166	171	anti-parallel
Strand 3	F	157	162	anti-parallel
Strand 4	F	203	208	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	59	62	first strand
Strand 2	G	2	6	anti-parallel
Strand 3	G	87	92	anti-parallel
Strand 4	G	98	104	anti-parallel
Strand 5	G	111	117	anti-parallel

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There are 9 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	66	71	first strand
Strand 2	G	25	30	anti-parallel
Strand 3	G	34	40	anti-parallel
Strand 4	G	47	53	anti-parallel
Strand 5	G	245	251	anti-parallel
Strand 6	G	235	241	anti-parallel
Strand 7	G	224	229	anti-parallel
Strand 8	G	135	140	anti-parallel
Strand 9	G	196	199	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6TNY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6TNY