Analysis of interatomic Contacts of Structural Units in PDB entry:
6TO4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TO4 entry

There are 4 chains in PDB entry 6TO4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 291
B
 PRO 3LYS 291
C
 LYS 2LYS 291
D
 THR 6LYS 291
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 6TO4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 24Right-handed alpha
Helix 2
AA2
A
34 43Right-handed alpha
Helix 3
AA3
A
51 58Right-handed alpha
Helix 4
AA4
A
68 77Right-handed alpha
Helix 5
AA5
A
78 86Right-handed alpha
Helix 6
AA6
A
97 111Right-handed alpha
Helix 7
AA7
A
123 127Right-handed 310
Helix 8
AA8
A
139 146Right-handed alpha
Helix 9
AA9
A
146 152Right-handed alpha
Helix 10
AB1
A
165 195Right-handed alpha
Helix 11
AB2
A
198 227Right-handed alpha
Helix 12
AB3
A
238 256Right-handed alpha
Helix 13
AB4
A
260 276Right-handed alpha
Helix 14
AB5
A
282 289Right-handed 310
Helix 15
AB6
B
10 24Right-handed alpha
Helix 16
AB7
B
34 43Right-handed alpha
Helix 17
AB8
B
51 58Right-handed alpha
Helix 18
AB9
B
68 77Right-handed alpha
Helix 19
AC1
B
78 86Right-handed alpha
Helix 20
AC2
B
97 110Right-handed alpha
Helix 21
AC3
B
123 127Right-handed 310
Helix 22
AC4
B
139 146Right-handed alpha
Helix 23
AC5
B
146 152Right-handed alpha
Helix 24
AC6
B
165 195Right-handed alpha
Helix 25
AC7
B
198 209Right-handed alpha
Helix 26
AC8
B
209 227Right-handed alpha
Helix 27
AC9
B
238 257Right-handed alpha
Helix 28
AD1
B
260 276Right-handed alpha
Helix 29
AD2
B
282 289Right-handed 310
Helix 30
AD3
C
11 24Right-handed alpha
Helix 31
AD4
C
34 43Right-handed alpha
Helix 32
AD5
C
51 58Right-handed alpha
Helix 33
AD6
C
68 77Right-handed alpha
Helix 34
AD7
C
78 86Right-handed alpha
Helix 35
AD8
C
97 111Right-handed alpha
Helix 36
AD9
C
123 127Right-handed 310
Helix 37
AE1
C
139 146Right-handed alpha
Helix 38
AE2
C
146 152Right-handed alpha
Helix 39
AE3
C
165 195Right-handed alpha
Helix 40
AE4
C
198 209Right-handed alpha
Helix 41
AE5
C
209 227Right-handed alpha
Helix 42
AE6
C
238 256Right-handed alpha
Helix 43
AE7
C
260 276Right-handed alpha
Helix 44
AE8
C
282 289Right-handed 310
Helix 45
AE9
D
11 21Right-handed alpha
Helix 46
AF1
D
52 58Right-handed alpha
Helix 47
AF2
D
70 77Right-handed alpha
Helix 48
AF3
D
81 86Right-handed alpha
Helix 49
AF4
D
97 111Right-handed alpha
Helix 50
AF5
D
123 127Right-handed 310
Helix 51
AF6
D
139 146Right-handed alpha
Helix 52
AF7
D
146 151Right-handed alpha
Helix 53
AF8
D
165 195Right-handed alpha
Helix 54
AF9
D
198 227Right-handed alpha
Helix 55
AG1
D
238 256Right-handed alpha
Helix 56
AG2
D
260 276Right-handed alpha
Helix 57
AG3
D
282 289Right-handed 310
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There are 4 sheets in PDB entry 6TO4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
28 31parallel
Strand 3
A
5 8parallel
Strand 4
A
61 64parallel
Strand 5
A
89 92parallel
Strand 6
A
114 120parallel
Strand 7
A
134 138anti-parallel
Strand 8
A
158 159parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 48first strand
Strand 2
B
28 31parallel
Strand 3
B
5 8parallel
Strand 4
B
61 64parallel
Strand 5
B
89 92parallel
Strand 6
B
114 120parallel
Strand 7
B
134 138anti-parallel
Strand 8
B
158 159parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 48first strand
Strand 2
C
28 31parallel
Strand 3
C
5 8parallel
Strand 4
C
61 64parallel
Strand 5
C
89 92parallel
Strand 6
C
114 120parallel
Strand 7
C
134 138anti-parallel
Strand 8
C
158 159parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
7 8first strand
Strand 2
D
62 64parallel
Strand 3
D
89 92parallel
Strand 4
D
114 120parallel
Strand 5
D
134 138anti-parallel
Strand 6
D
158 159parallel
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