Analysis of interatomic Contacts of Structural Units in PDB entry:
6TO8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TO8 entry

There are 2 chains in PDB entry 6TO8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1PRO 197
A
 SER 24THR 393
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6TO8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
15 23Right-handed alpha
Helix 2
AA2
B
37 55Right-handed alpha
Helix 3
AA3
B
148 165Right-handed alpha
Helix 4
AA4
B
179 184Right-handed alpha
Helix 5
AA5
A
26 33Right-handed alpha
Helix 6
AA6
A
46 54Right-handed alpha
Helix 7
AA7
A
57 72Right-handed alpha
Helix 8
AA8
A
91 96Right-handed alpha
Helix 9
AA9
A
102 118Right-handed alpha
Helix 10
AB1
A
139 141Right-handed 310
Helix 11
AB2
A
192 197Right-handed alpha
Helix 12
AB3
A
197 215Right-handed alpha
Helix 13
AB4
A
237 250Right-handed alpha
Helix 14
AB5
A
285 298Right-handed alpha
Helix 15
AB6
A
300 305Right-handed alpha
Helix 16
AB7
A
317 326Right-handed alpha
Helix 17
AB8
A
327 343Right-handed alpha
Helix 18
AB9
A
356 361Right-handed 310
Helix 19
AC1
A
362 371Right-handed alpha
Helix 20
AC2
A
380 386Right-handed alpha
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There are 6 sheets in PDB entry 6TO8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 5first strand
Strand 2
B
62 67anti-parallel
Strand 3
B
132 137anti-parallel
Strand 4
B
86 91anti-parallel
Strand 5
B
99 101anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 108first strand
Strand 2
B
115 116anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 79first strand
Strand 2
A
351 354anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 136first strand
Strand 2
A
119 125anti-parallel
Strand 3
A
176 180anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 146first strand
Strand 2
A
155 158anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 227first strand
Strand 2
A
268 271anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il