Analysis of interatomic Contacts of Structural Units in PDB entry:
6TOD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TOD entry

There are 2 chains in PDB entry 6TOD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 45PRO 378
B
 ASP 29ALA 383
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 6TOD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 74Right-handed alpha
Helix 2
AA2
A
75 78Right-handed 310
Helix 3
AA3
A
79 110Right-handed alpha
Helix 4
AA4
A
114 150Right-handed alpha
Helix 5
AA5
A
157 176Right-handed alpha
Helix 6
AA6
A
176 182Right-handed alpha
Helix 7
AA7
A
189 193Right-handed 310
Helix 8
AA8
A
210 224Right-handed alpha
Helix 9
AA9
A
224 243Right-handed alpha
Helix 10
AB1
A
251 252Right-handed 310
Helix 11
AB2
A
286 286Right-handed 310
Helix 12
AB3
A
287 323Right-handed alpha
Helix 13
AB4
A
329 331Right-handed 310
Helix 14
AB5
A
332 362Right-handed alpha
Helix 15
AB6
A
362 375Right-handed alpha
Helix 16
AB7
B
30 39Right-handed alpha
Helix 17
AB8
B
39 44Right-handed alpha
Helix 18
AB9
B
44 73Right-handed alpha
Helix 19
AC1
B
74 78Right-handed 310
Helix 20
AC2
B
79 110Right-handed alpha
Helix 21
AC3
B
114 150Right-handed alpha
Helix 22
AC4
B
157 176Right-handed alpha
Helix 23
AC5
B
176 182Right-handed alpha
Helix 24
AC6
B
210 224Right-handed alpha
Helix 25
AC7
B
224 243Right-handed alpha
Helix 26
AC8
B
252 323Right-handed alpha
Helix 27
AC9
B
332 362Right-handed alpha
Helix 28
AD1
B
362 375Right-handed alpha
Helix 29
AD2
B
375 383Right-handed alpha
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There are 2 sheets in PDB entry 6TOD. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 187first strand
Strand 2
A
200 204anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 186first strand
Strand 2
B
201 204anti-parallel
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