Analysis of interatomic Contacts of Structural Units in PDB entry:
6TP5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6TP5 entry

There are 2 chains in PDB entry 6TP5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 107	GLY 481
B	LEU 108	GLY 481

There are 28 helices in PDB entry 6TP5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	152	167	Right-handed alpha
Helix 2	AA2	A	189	198	Right-handed alpha
Helix 3	AA3	A	206	212	Right-handed alpha
Helix 4	AA4	A	213	218	Right-handed 310
Helix 5	AA5	A	223	234	Right-handed alpha
Helix 6	AA6	A	246	251	Right-handed alpha
Helix 7	AA7	A	253	264	Right-handed alpha
Helix 8	AA8	A	267	271	Right-handed 310
Helix 9	AA9	A	287	302	Right-handed alpha
Helix 10	AB1	A	304	310	Right-handed alpha
Helix 11	AB2	A	386	391	Right-handed alpha
Helix 12	AB3	A	403	407	Right-handed 310
Helix 13	AB4	A	437	440	Right-handed 310
Helix 14	AB5	A	463	481	Right-handed alpha
Helix 15	AB6	B	152	167	Right-handed alpha
Helix 16	AB7	B	189	198	Right-handed alpha
Helix 17	AB8	B	206	212	Right-handed alpha
Helix 18	AB9	B	213	218	Right-handed 310
Helix 19	AC1	B	223	235	Right-handed alpha
Helix 20	AC2	B	246	251	Right-handed alpha
Helix 21	AC3	B	253	264	Right-handed alpha
Helix 22	AC4	B	267	271	Right-handed 310
Helix 23	AC5	B	287	302	Right-handed alpha
Helix 24	AC6	B	304	310	Right-handed alpha
Helix 25	AC7	B	386	391	Right-handed alpha
Helix 26	AC8	B	403	407	Right-handed 310
Helix 27	AC9	B	437	440	Right-handed 310
Helix 28	AD1	B	463	480	Right-handed alpha

There are 12 sheets in PDB entry 6TP5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	125	first strand
Strand 2	A	133	139	anti-parallel
Strand 3	A	144	147	anti-parallel
Strand 4	A	418	422	anti-parallel
Strand 5	A	358	365	anti-parallel
Strand 6	A	451	459	anti-parallel
Strand 7	A	314	319	anti-parallel
Strand 8	A	276	280	anti-parallel
Strand 9	A	169	170	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	205	first strand
Strand 2	A	244	245	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	274	first strand
Strand 2	A	324	328	anti-parallel
Strand 3	A	441	443	anti-parallel
Strand 4	A	375	377	anti-parallel
Strand 5	A	409	411	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	340	first strand
Strand 2	A	354	355	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	372	first strand
Strand 2	A	446	448	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	424	426	first strand
Strand 2	A	432	435	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	125	first strand
Strand 2	B	133	139	anti-parallel
Strand 3	B	144	147	anti-parallel
Strand 4	B	418	422	anti-parallel
Strand 5	B	358	365	anti-parallel
Strand 6	B	451	459	anti-parallel
Strand 7	B	314	319	anti-parallel
Strand 8	B	276	280	anti-parallel
Strand 9	B	169	170	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	205	first strand
Strand 2	B	244	245	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	274	first strand
Strand 2	B	324	328	anti-parallel
Strand 3	B	441	443	anti-parallel
Strand 4	B	375	377	anti-parallel
Strand 5	B	409	411	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	340	first strand
Strand 2	B	354	355	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	372	first strand
Strand 2	B	446	448	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	424	426	first strand
Strand 2	B	432	435	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6TP5

Analysis of interatomic Contacts of Structural Units in PDB entry:
6TP5