Analysis of interatomic Contacts of Structural Units in PDB entry:
6TPC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TPC entry

There are 2 chains in PDB entry 6TPC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 10PHE 314
C
 ALA 10PHE 314
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6TPC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 53Right-handed alpha
Helix 2
AA2
A
62 67Right-handed alpha
Helix 3
AA3
A
76 93Right-handed alpha
Helix 4
AA4
A
114 127Right-handed alpha
Helix 5
AA5
A
128 130Right-handed 310
Helix 6
AA6
A
147 165Right-handed alpha
Helix 7
AA7
A
177 181Right-handed 310
Helix 8
AA8
A
184 189Right-handed alpha
Helix 9
AA9
A
190 195Right-handed 310
Helix 10
AB1
A
225 241Right-handed alpha
Helix 11
AB2
A
255 272Right-handed alpha
Helix 12
AB3
A
300 312Right-handed alpha
Helix 13
AB4
C
42 53Right-handed alpha
Helix 14
AB5
C
62 67Right-handed alpha
Helix 15
AB6
C
76 93Right-handed alpha
Helix 16
AB7
C
114 128Right-handed alpha
Helix 17
AB8
C
147 165Right-handed alpha
Helix 18
AB9
C
177 181Right-handed 310
Helix 19
AC1
C
184 189Right-handed alpha
Helix 20
AC2
C
190 195Right-handed 310
Helix 21
AC3
C
225 230Right-handed alpha
Helix 22
AC4
C
231 242Right-handed alpha
Helix 23
AC5
C
255 272Right-handed alpha
Helix 24
AC6
C
300 312Right-handed alpha
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There are 4 sheets in PDB entry 6TPC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 20first strand
Strand 2
A
56 61parallel
Strand 3
A
96 101parallel
Strand 4
A
135 138parallel
Strand 5
A
172 175parallel
Strand 6
A
202 208parallel
Strand 7
A
245 250parallel
Strand 8
A
276 284parallel
Strand 9
A
15 20parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
110 111anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
15 20first strand
Strand 2
C
56 61parallel
Strand 3
C
96 101parallel
Strand 4
C
135 138parallel
Strand 5
C
172 174parallel
Strand 6
C
202 209parallel
Strand 7
C
245 251parallel
Strand 8
C
276 284parallel
Strand 9
C
15 20parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
106 107first strand
Strand 2
C
110 111anti-parallel
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