Analysis of interatomic Contacts of Structural Units in PDB entry:
6TPE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TPE entry

There are 4 chains in PDB entry 6TPE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 864GLU 1033
A
 THR 1036LEU 1153
B
 GLU 864GLU 1033
B
 THR 1036LYS 1154
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6TPE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
918 932Right-handed alpha
Helix 2
AA2
A
963 971Right-handed alpha
Helix 3
AA3
A
976 997Right-handed alpha
Helix 4
AA4
A
1005 1007Right-handed 310
Helix 5
AA5
A
1044 1048Right-handed 310
Helix 6
AA6
A
1049 1054Right-handed alpha
Helix 7
AA7
A
1059 1076Right-handed alpha
Helix 8
AA8
A
1083 1093Right-handed alpha
Helix 9
AA9
A
1096 1098Right-handed 310
Helix 10
AB1
A
1099 1111Right-handed alpha
Helix 11
AB2
A
1121 1131Right-handed alpha
Helix 12
AB3
A
1135 1139Right-handed 310
Helix 13
AB4
A
1141 1153Right-handed alpha
Helix 14
AB5
B
918 932Right-handed alpha
Helix 15
AB6
B
963 971Right-handed alpha
Helix 16
AB7
B
976 997Right-handed alpha
Helix 17
AB8
B
1005 1007Right-handed 310
Helix 18
AB9
B
1044 1048Right-handed 310
Helix 19
AC1
B
1049 1054Right-handed alpha
Helix 20
AC2
B
1059 1076Right-handed alpha
Helix 21
AC3
B
1083 1093Right-handed alpha
Helix 22
AC4
B
1096 1098Right-handed 310
Helix 23
AC5
B
1099 1111Right-handed alpha
Helix 24
AC6
B
1121 1131Right-handed alpha
Helix 25
AC7
B
1135 1139Right-handed 310
Helix 26
AC8
B
1141 1154Right-handed alpha
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There are 8 sheets in PDB entry 6TPE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
875 884first strand
Strand 2
A
887 894anti-parallel
Strand 3
A
903 910anti-parallel
Strand 4
A
953 957anti-parallel
Strand 5
A
940 944anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
999 1000first strand
Strand 2
A
1026 1027anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1009 1013first strand
Strand 2
A
1016 1019anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1035 1036first strand
Strand 2
A
1057 1058anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
875 884first strand
Strand 2
B
887 894anti-parallel
Strand 3
B
903 910anti-parallel
Strand 4
B
953 957anti-parallel
Strand 5
B
940 944anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
999 1000first strand
Strand 2
B
1026 1027anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1009 1013first strand
Strand 2
B
1016 1019anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1035 1036first strand
Strand 2
B
1057 1058anti-parallel
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