Analysis of interatomic Contacts of Structural Units in PDB entry:
6TPI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TPI entry

There are 3 chains in PDB entry 6TPI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 40ARG 419
B
 GLY 109SER 209
C
 GLN 110MET 206
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6TPI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 127Right-handed alpha
Helix 2
AA2
A
134 139Right-handed alpha
Helix 3
AA3
A
143 218Right-handed alpha
Helix 4
AA4
A
221 265Right-handed alpha
Helix 5
AA5
A
265 270Right-handed alpha
Helix 6
AA6
A
278 289Right-handed alpha
Helix 7
AA7
A
413 417Right-handed 310
Helix 8
AA8
B
120 133Right-handed alpha
Helix 9
AA9
B
144 154Right-handed alpha
Helix 10
AB1
B
161 165Right-handed 310
Helix 11
AB2
B
180 183Right-handed 310
Helix 12
AB3
B
184 197Right-handed alpha
Helix 13
AB4
C
120 131Right-handed alpha
Helix 14
AB5
C
144 156Right-handed alpha
Helix 15
AB6
C
180 183Right-handed 310
Helix 16
AB7
C
184 197Right-handed alpha
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There are 6 sheets in PDB entry 6TPI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 308first strand
Strand 2
A
323 326anti-parallel
Strand 3
A
399 406anti-parallel
Strand 4
A
362 369anti-parallel
Strand 5
A
351 359anti-parallel
Strand 6
A
339 347anti-parallel
Strand 7
A
379 380anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 308first strand
Strand 2
A
323 326anti-parallel
Strand 3
A
399 406anti-parallel
Strand 4
A
409 411anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 315first strand
Strand 2
A
318 319anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 334first strand
Strand 2
A
385 388anti-parallel
Strand 3
A
371 372anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 143first strand
Strand 2
B
173 178anti-parallel
Strand 3
B
111 115anti-parallel
Strand 4
B
201 205anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
137 143first strand
Strand 2
C
173 178anti-parallel
Strand 3
C
111 115anti-parallel
Strand 4
C
201 205anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il