Analysis of interatomic Contacts of Structural Units in PDB entry:
6TPK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TPK entry

There are 2 chains in PDB entry 6TPK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 35ASP 341
A
 SER 343SER 536
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6TPK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 64Right-handed alpha
Helix 2
AA2
A
73 102Right-handed alpha
Helix 3
AA3
A
108 143Right-handed alpha
Helix 4
AA4
A
149 174Right-handed alpha
Helix 5
AA5
A
195 209Right-handed alpha
Helix 6
AA6
A
209 229Right-handed alpha
Helix 7
AA7
A
267 299Right-handed alpha
Helix 8
AA8
A
306 333Right-handed alpha
Helix 9
AA9
A
334 337Right-handed 310
Helix 10
AB1
A
348 352Right-handed 310
Helix 11
AB2
A
355 367Right-handed alpha
Helix 12
AB3
A
387 400Right-handed alpha
Helix 13
AB4
A
403 405Right-handed 310
Helix 14
AB5
A
416 430Right-handed alpha
Helix 15
AB6
A
441 452Right-handed alpha
Helix 16
AB7
A
465 474Right-handed alpha
Helix 17
AB8
A
484 490Right-handed alpha
Helix 18
AB9
A
502 517Right-handed alpha
Helix 19
AC1
A
521 535Right-handed alpha
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There are 2 sheets in PDB entry 6TPK. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 179first strand
Strand 2
A
185 189anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 436first strand
Strand 2
A
407 412parallel
Strand 3
A
373 378parallel
Strand 4
A
454 457parallel
Strand 5
A
477 481parallel
Strand 6
A
496 498parallel
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