Analysis of interatomic Contacts of Structural Units in PDB entry:
6TPP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TPP entry

There are 2 chains in PDB entry 6TPP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 6GLN 382
B
 LYS 6GLN 382
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 6TPP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 12Right-handed alpha
Helix 2
AA2
A
16 21Right-handed alpha
Helix 3
AA3
A
24 42Right-handed alpha
Helix 4
AA4
A
69 82Right-handed alpha
Helix 5
AA5
A
84 99Right-handed alpha
Helix 6
AA6
A
126 145Right-handed alpha
Helix 7
AA7
A
152 167Right-handed alpha
Helix 8
AA8
A
168 170Right-handed 310
Helix 9
AA9
A
194 198Right-handed 310
Helix 10
AB1
A
199 210Right-handed alpha
Helix 11
AB2
A
211 213Right-handed 310
Helix 12
AB3
A
214 233Right-handed alpha
Helix 13
AB4
A
263 265Right-handed 310
Helix 14
AB5
A
266 281Right-handed alpha
Helix 15
AB6
A
284 298Right-handed alpha
Helix 16
AB7
A
301 304Right-handed 310
Helix 17
AB8
A
321 332Right-handed alpha
Helix 18
AB9
A
333 335Right-handed 310
Helix 19
AC1
A
340 350Right-handed alpha
Helix 20
AC2
A
358 375Right-handed alpha
Helix 21
AC3
B
7 12Right-handed alpha
Helix 22
AC4
B
16 21Right-handed alpha
Helix 23
AC5
B
24 42Right-handed alpha
Helix 24
AC6
B
69 82Right-handed alpha
Helix 25
AC7
B
84 99Right-handed alpha
Helix 26
AC8
B
126 145Right-handed alpha
Helix 27
AC9
B
152 167Right-handed alpha
Helix 28
AD1
B
194 198Right-handed 310
Helix 29
AD2
B
199 210Right-handed alpha
Helix 30
AD3
B
211 213Right-handed 310
Helix 31
AD4
B
214 233Right-handed alpha
Helix 32
AD5
B
263 266Right-handed 310
Helix 33
AD6
B
267 281Right-handed alpha
Helix 34
AD7
B
284 298Right-handed alpha
Helix 35
AD8
B
301 304Right-handed 310
Helix 36
AD9
B
321 332Right-handed alpha
Helix 37
AE1
B
333 335Right-handed 310
Helix 38
AE2
B
340 350Right-handed alpha
Helix 39
AE3
B
358 375Right-handed alpha
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There are 8 sheets in PDB entry 6TPP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
56 59anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 68first strand
Strand 2
A
113 114anti-parallel
Strand 3
A
120 122anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 178first strand
Strand 2
A
183 184anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 308first strand
Strand 2
A
314 318anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 52first strand
Strand 2
B
56 59anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 68first strand
Strand 2
B
113 114anti-parallel
Strand 3
B
120 122anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 178first strand
Strand 2
B
183 184anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
306 308first strand
Strand 2
B
314 318anti-parallel
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