Analysis of interatomic Contacts of Structural Units in PDB entry:
6TPT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TPT entry

There is 1 chain in PDB entry 6TPT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 512GLU 705
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There is 1 helix in PDB entry 6TPT. Click on helix number for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
631 635Right-handed 310
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There are 6 sheets in PDB entry 6TPT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
519 522first strand
Strand 2
A
528 531anti-parallel
Strand 3
A
566 569anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
552 561first strand
Strand 2
A
540 549anti-parallel
Strand 3
A
577 586anti-parallel
Strand 4
A
589 590anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
552 561first strand
Strand 2
A
540 549anti-parallel
Strand 3
A
577 586anti-parallel
Strand 4
A
597 600anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
611 617first strand
Strand 2
A
622 628anti-parallel
Strand 3
A
668 672anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
657 663first strand
Strand 2
A
641 648anti-parallel
Strand 3
A
679 687anti-parallel
Strand 4
A
692 695anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
657 663first strand
Strand 2
A
641 648anti-parallel
Strand 3
A
679 687anti-parallel
Strand 4
A
699 702anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il