Analysis of interatomic Contacts of Structural Units in PDB entry:
6TPU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TPU entry

There are 2 chains in PDB entry 6TPU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 512GLU 705
B
 GLN 514ASP 706
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 6TPU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
551 553Right-handed 310
Helix 2
AA2
A
631 635Right-handed 310
Helix 3
AA3
B
551 553Right-handed 310
Helix 4
AA4
B
631 635Right-handed 310
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There are 12 sheets in PDB entry 6TPU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
519 522first strand
Strand 2
A
528 531anti-parallel
Strand 3
A
566 569anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
556 561first strand
Strand 2
A
540 549anti-parallel
Strand 3
A
577 586anti-parallel
Strand 4
A
589 590anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
556 561first strand
Strand 2
A
540 549anti-parallel
Strand 3
A
577 586anti-parallel
Strand 4
A
597 600anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
611 617first strand
Strand 2
A
623 628anti-parallel
Strand 3
A
668 671anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
656 663first strand
Strand 2
A
641 648anti-parallel
Strand 3
A
679 688anti-parallel
Strand 4
A
691 695anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
656 663first strand
Strand 2
A
641 648anti-parallel
Strand 3
A
679 688anti-parallel
Strand 4
A
699 702anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
519 522first strand
Strand 2
B
528 531anti-parallel
Strand 3
B
566 569anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
557 561first strand
Strand 2
B
540 549anti-parallel
Strand 3
B
577 586anti-parallel
Strand 4
B
591 593anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
557 561first strand
Strand 2
B
540 549anti-parallel
Strand 3
B
577 586anti-parallel
Strand 4
B
597 600anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
611 617first strand
Strand 2
B
622 628anti-parallel
Strand 3
B
668 672anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
656 663first strand
Strand 2
B
639 648anti-parallel
Strand 3
B
679 688anti-parallel
Strand 4
B
691 695anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
656 663first strand
Strand 2
B
639 648anti-parallel
Strand 3
B
679 688anti-parallel
Strand 4
B
699 702anti-parallel
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