Analysis of interatomic Contacts of Structural Units in PDB entry:
6TPV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6TPV entry

There are 2 chains in PDB entry 6TPV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 318	GLN 508
B	LEU 314	GLN 509

There are 2 helices in PDB entry 6TPV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	458	462	Right-handed 310
Helix 2	AA2	B	458	462	Right-handed 310

There are 9 sheets in PDB entry 6TPV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	330	first strand
Strand 2	A	335	340	anti-parallel
Strand 3	A	373	376	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	369	first strand
Strand 2	A	349	356	anti-parallel
Strand 3	A	384	392	anti-parallel
Strand 4	A	404	407	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	424	first strand
Strand 2	A	430	435	anti-parallel
Strand 3	A	472	475	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	463	467	first strand
Strand 2	A	444	452	anti-parallel
Strand 3	A	483	492	anti-parallel
Strand 4	A	503	506	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	330	first strand
Strand 2	B	335	340	anti-parallel
Strand 3	B	373	376	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	369	first strand
Strand 2	B	349	356	anti-parallel
Strand 3	B	384	392	anti-parallel
Strand 4	B	397	400	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	369	first strand
Strand 2	B	349	356	anti-parallel
Strand 3	B	384	392	anti-parallel
Strand 4	B	404	407	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	424	first strand
Strand 2	B	430	435	anti-parallel
Strand 3	B	472	475	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	463	467	first strand
Strand 2	B	446	452	anti-parallel
Strand 3	B	483	491	anti-parallel
Strand 4	B	503	506	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6TPV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6TPV