Analysis of interatomic Contacts of Structural Units in PDB entry:
6TQD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6TQD entry

There are 4 chains in PDB entry 6TQD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 452	GLN 655
B	LYS 450	GLN 655
C	ASP 452	GLN 655
D	LYS 450	ASP 489

There are 6 helices in PDB entry 6TQD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	489	494	Right-handed alpha
Helix 2	AA2	B	489	494	Right-handed alpha
Helix 3	AA3	C	489	494	Right-handed alpha
Helix 4	AA4	D	489	494	Right-handed alpha
Helix 5	AA5	E	489	494	Right-handed alpha
Helix 6	AA6	F	489	494	Right-handed alpha

There are 42 sheets in PDB entry 6TQD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	454	457	first strand
Strand 2	A	475	478	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	462	465	first strand
Strand 2	A	538	549	parallel
Strand 3	A	524	533	anti-parallel
Strand 4	A	482	488	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	469	472	first strand
Strand 2	A	510	513	anti-parallel
Strand 3	A	498	501	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	559	565	first strand
Strand 2	A	578	586	anti-parallel
Strand 3	A	589	590	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	559	565	first strand
Strand 2	A	578	586	anti-parallel
Strand 3	A	619	625	anti-parallel
Strand 4	A	606	607	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	569	571	first strand
Strand 2	A	650	653	parallel
Strand 3	A	630	637	anti-parallel
Strand 4	A	595	602	anti-parallel
Strand 5	A	611	613	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	569	571	first strand
Strand 2	A	650	653	parallel
Strand 3	A	630	637	anti-parallel
Strand 4	A	645	646	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	454	457	first strand
Strand 2	B	475	478	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	462	465	first strand
Strand 2	B	542	549	parallel
Strand 3	B	524	533	anti-parallel
Strand 4	B	482	488	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	469	472	first strand
Strand 2	B	510	513	anti-parallel
Strand 3	B	498	501	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	559	565	first strand
Strand 2	B	578	586	anti-parallel
Strand 3	B	589	590	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	559	565	first strand
Strand 2	B	578	586	anti-parallel
Strand 3	B	619	625	anti-parallel
Strand 4	B	606	607	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	569	571	first strand
Strand 2	B	650	653	parallel
Strand 3	B	630	637	anti-parallel
Strand 4	B	595	602	anti-parallel
Strand 5	B	611	613	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	569	571	first strand
Strand 2	B	650	653	parallel
Strand 3	B	630	637	anti-parallel
Strand 4	B	645	646	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	454	457	first strand
Strand 2	C	475	478	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	462	465	first strand
Strand 2	C	542	549	parallel
Strand 3	C	524	533	anti-parallel
Strand 4	C	482	488	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	469	472	first strand
Strand 2	C	510	513	anti-parallel
Strand 3	C	498	501	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	559	565	first strand
Strand 2	C	578	586	anti-parallel
Strand 3	C	589	590	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	559	565	first strand
Strand 2	C	578	586	anti-parallel
Strand 3	C	619	625	anti-parallel
Strand 4	C	606	607	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	569	571	first strand
Strand 2	C	650	653	parallel
Strand 3	C	630	637	anti-parallel
Strand 4	C	595	602	anti-parallel
Strand 5	C	611	613	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	569	571	first strand
Strand 2	C	650	653	parallel
Strand 3	C	630	637	anti-parallel
Strand 4	C	645	646	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	454	457	first strand
Strand 2	D	475	478	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	462	465	first strand
Strand 2	D	542	549	parallel
Strand 3	D	524	533	anti-parallel
Strand 4	D	482	488	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	469	472	first strand
Strand 2	D	510	513	anti-parallel
Strand 3	D	498	501	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	559	565	first strand
Strand 2	D	578	586	anti-parallel
Strand 3	D	589	590	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	559	565	first strand
Strand 2	D	578	586	anti-parallel
Strand 3	D	619	625	anti-parallel
Strand 4	D	606	607	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	569	571	first strand
Strand 2	D	650	653	parallel
Strand 3	D	630	637	anti-parallel
Strand 4	D	595	602	anti-parallel
Strand 5	D	611	613	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	569	571	first strand
Strand 2	D	650	653	parallel
Strand 3	D	630	637	anti-parallel
Strand 4	D	645	646	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	454	457	first strand
Strand 2	E	475	478	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	462	465	first strand
Strand 2	E	542	549	parallel
Strand 3	E	524	533	anti-parallel
Strand 4	E	482	488	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	469	472	first strand
Strand 2	E	510	513	anti-parallel
Strand 3	E	498	501	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	559	565	first strand
Strand 2	E	578	586	anti-parallel
Strand 3	E	589	590	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	559	565	first strand
Strand 2	E	578	586	anti-parallel
Strand 3	E	619	625	anti-parallel
Strand 4	E	606	607	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	569	571	first strand
Strand 2	E	650	653	parallel
Strand 3	E	630	637	anti-parallel
Strand 4	E	595	602	anti-parallel
Strand 5	E	611	613	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	569	571	first strand
Strand 2	E	650	653	parallel
Strand 3	E	630	637	anti-parallel
Strand 4	E	645	646	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	454	457	first strand
Strand 2	F	475	478	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	462	465	first strand
Strand 2	F	542	549	parallel
Strand 3	F	524	533	anti-parallel
Strand 4	F	482	488	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	469	471	first strand
Strand 2	F	510	513	anti-parallel
Strand 3	F	498	501	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	559	565	first strand
Strand 2	F	578	586	anti-parallel
Strand 3	F	589	590	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	559	565	first strand
Strand 2	F	578	586	anti-parallel
Strand 3	F	619	625	anti-parallel
Strand 4	F	606	607	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	569	571	first strand
Strand 2	F	650	653	parallel
Strand 3	F	630	637	anti-parallel
Strand 4	F	595	602	anti-parallel
Strand 5	F	611	613	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	569	571	first strand
Strand 2	F	650	653	parallel
Strand 3	F	630	637	anti-parallel
Strand 4	F	645	646	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6TQD

Analysis of interatomic Contacts of Structural Units in PDB entry:
6TQD