Analysis of interatomic Contacts of Structural Units in PDB entry:
6TQF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TQF entry

There are 2 chains in PDB entry 6TQF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 634
B
 MET 1ALA 634
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 6TQF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 35Right-handed alpha
Helix 2
AA2
A
37 43Right-handed alpha
Helix 3
AA3
A
50 55Right-handed alpha
Helix 4
AA4
A
67 72Right-handed alpha
Helix 5
AA5
A
72 102Right-handed alpha
Helix 6
AA6
A
102 107Right-handed alpha
Helix 7
AA7
A
112 119Right-handed alpha
Helix 8
AA8
A
122 131Right-handed alpha
Helix 9
AA9
A
132 147Right-handed alpha
Helix 10
AB1
A
151 164Right-handed alpha
Helix 11
AB2
A
190 197Right-handed alpha
Helix 12
AB3
A
219 227Right-handed alpha
Helix 13
AB4
A
232 236Right-handed 310
Helix 14
AB5
A
248 253Right-handed alpha
Helix 15
AB6
A
253 264Right-handed alpha
Helix 16
AB7
A
269 272Right-handed 310
Helix 17
AB8
A
273 282Right-handed alpha
Helix 18
AB9
A
287 292Right-handed alpha
Helix 19
AC1
A
296 304Right-handed alpha
Helix 20
AC2
A
317 323Right-handed alpha
Helix 21
AC3
A
323 329Right-handed alpha
Helix 22
AC4
A
329 334Right-handed alpha
Helix 23
AC5
A
334 344Right-handed alpha
Helix 24
AC6
A
347 351Right-handed 310
Helix 25
AC7
A
354 359Right-handed alpha
Helix 26
AC8
A
366 374Right-handed alpha
Helix 27
AC9
A
377 382Right-handed alpha
Helix 28
AD1
A
397 407Right-handed alpha
Helix 29
AD2
A
506 512Right-handed alpha
Helix 30
AD3
A
563 568Right-handed alpha
Helix 31
AD4
A
586 597Right-handed alpha
Helix 32
AD5
B
20 35Right-handed alpha
Helix 33
AD6
B
37 43Right-handed alpha
Helix 34
AD7
B
50 55Right-handed alpha
Helix 35
AD8
B
67 72Right-handed alpha
Helix 36
AD9
B
72 102Right-handed alpha
Helix 37
AE1
B
102 107Right-handed alpha
Helix 38
AE2
B
112 119Right-handed alpha
Helix 39
AE3
B
122 131Right-handed alpha
Helix 40
AE4
B
132 147Right-handed alpha
Helix 41
AE5
B
151 164Right-handed alpha
Helix 42
AE6
B
190 197Right-handed alpha
Helix 43
AE7
B
219 227Right-handed alpha
Helix 44
AE8
B
232 236Right-handed 310
Helix 45
AE9
B
248 253Right-handed alpha
Helix 46
AF1
B
253 264Right-handed alpha
Helix 47
AF2
B
269 272Right-handed 310
Helix 48
AF3
B
273 282Right-handed alpha
Helix 49
AF4
B
287 292Right-handed alpha
Helix 50
AF5
B
296 304Right-handed alpha
Helix 51
AF6
B
317 323Right-handed alpha
Helix 52
AF7
B
323 329Right-handed alpha
Helix 53
AF8
B
329 334Right-handed alpha
Helix 54
AF9
B
334 344Right-handed alpha
Helix 55
AG1
B
347 351Right-handed 310
Helix 56
AG2
B
354 359Right-handed alpha
Helix 57
AG3
B
366 374Right-handed alpha
Helix 58
AG4
B
377 382Right-handed alpha
Helix 59
AG5
B
397 407Right-handed alpha
Helix 60
AG6
B
506 512Right-handed alpha
Helix 61
AG7
B
563 568Right-handed alpha
Helix 62
AG8
B
586 597Right-handed alpha
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There are 8 sheets in PDB entry 6TQF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 240first strand
Strand 2
A
245 246anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
418 421first strand
Strand 2
A
480 486parallel
Strand 3
A
427 435anti-parallel
Strand 4
A
441 443anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
418 421first strand
Strand 2
A
480 486parallel
Strand 3
A
427 435anti-parallel
Strand 4
A
448 450anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
573 575first strand
Strand 2
A
602 605parallel
Strand 3
A
455 459parallel
Strand 4
A
617 621parallel
Strand 5
A
627 631anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
239 240first strand
Strand 2
B
245 246anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
418 421first strand
Strand 2
B
480 486parallel
Strand 3
B
427 435anti-parallel
Strand 4
B
441 443anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
418 421first strand
Strand 2
B
480 486parallel
Strand 3
B
427 435anti-parallel
Strand 4
B
448 450anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
573 575first strand
Strand 2
B
602 605parallel
Strand 3
B
455 459parallel
Strand 4
B
617 621parallel
Strand 5
B
627 631anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il