Analysis of interatomic Contacts of Structural Units in PDB entry:
6TQM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TQM entry

There are 4 chains in PDB entry 6TQM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
F
 ASN 450GLU 869
C
 ASN 450GLU 869
B
 MET 1GLU 869
A
 MET 1GLU 869
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are109 helices in PDB entry 6TQM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
F
466 471Right-handed alpha
Helix 2
AA2
F
472 477Right-handed alpha
Helix 3
AA3
F
488 493Right-handed alpha
Helix 4
AA4
F
497 507Right-handed alpha
Helix 5
AA5
F
523 533Right-handed alpha
Helix 6
AA6
F
546 558Right-handed alpha
Helix 7
AA7
F
649 659Right-handed alpha
Helix 8
AA8
F
671 677Right-handed alpha
Helix 9
AA9
F
677 682Right-handed alpha
Helix 10
AB1
F
686 690Right-handed 310
Helix 11
AB2
F
692 696Right-handed 310
Helix 12
AB3
F
698 715Right-handed alpha
Helix 13
AB4
F
721 729Right-handed alpha
Helix 14
AB5
F
738 743Right-handed alpha
Helix 15
AB6
F
744 749Right-handed alpha
Helix 16
AB7
F
772 777Right-handed alpha
Helix 17
AB8
F
777 782Right-handed alpha
Helix 18
AB9
F
790 810Right-handed alpha
Helix 19
AC1
F
814 819Right-handed 310
Helix 20
AC2
F
829 834Right-handed alpha
Helix 21
AC3
F
850 861Right-handed alpha
Helix 22
AC4
C
466 471Right-handed alpha
Helix 23
AC5
C
472 477Right-handed alpha
Helix 24
AC6
C
488 493Right-handed alpha
Helix 25
AC7
C
497 505Right-handed alpha
Helix 26
AC8
C
523 533Right-handed alpha
Helix 27
AC9
C
546 561Right-handed alpha
Helix 28
AD1
C
567 571Right-handed 310
Helix 29
AD2
C
649 659Right-handed alpha
Helix 30
AD3
C
686 690Right-handed 310
Helix 31
AD4
C
698 706Right-handed alpha
Helix 32
AD5
C
709 714Right-handed alpha
Helix 33
AD6
C
721 730Right-handed alpha
Helix 34
AD7
C
748 752Right-handed 310
Helix 35
AD8
C
771 782Right-handed alpha
Helix 36
AD9
C
790 809Right-handed alpha
Helix 37
AE1
C
814 819Right-handed 310
Helix 38
AE2
C
829 837Right-handed alpha
Helix 39
AE3
C
850 861Right-handed alpha
Helix 40
AE4
B
5 24Right-handed alpha
Helix 41
AE5
B
27 31Right-handed 310
Helix 42
AE6
B
39 44Right-handed alpha
Helix 43
AE7
B
53 58Right-handed alpha
Helix 44
AE8
B
117 122Right-handed alpha
Helix 45
AE9
B
139 143Right-handed 310
Helix 46
AF1
B
144 158Right-handed alpha
Helix 47
AF2
B
159 161Right-handed 310
Helix 48
AF3
B
174 179Right-handed alpha
Helix 49
AF4
B
198 203Right-handed alpha
Helix 50
AF5
B
257 259Right-handed 310
Helix 51
AF6
B
263 270Right-handed alpha
Helix 52
AF7
B
277 283Right-handed alpha
Helix 53
AF8
B
300 309Right-handed alpha
Helix 54
AF9
B
348 353Right-handed alpha
Helix 55
AG1
B
356 364Right-handed alpha
Helix 56
AG2
B
380 385Right-handed alpha
Helix 57
AG3
B
466 477Right-handed alpha
Helix 58
AG4
B
496 499Right-handed 310
Helix 59
AG5
B
500 505Right-handed alpha
Helix 60
AG6
B
523 533Right-handed alpha
Helix 61
AG7
B
553 558Right-handed alpha
Helix 62
AG8
B
650 659Right-handed alpha
Helix 63
AG9
B
672 685Right-handed alpha
Helix 64
AH1
B
687 692Right-handed alpha
Helix 65
AH2
B
698 704Right-handed alpha
Helix 66
AH3
B
706 712Right-handed alpha
Helix 67
AH4
B
721 730Right-handed alpha
Helix 68
AH5
B
739 743Right-handed 310
Helix 69
AH6
B
748 752Right-handed 310
Helix 70
AH7
B
773 782Right-handed alpha
Helix 71
AH8
B
790 809Right-handed alpha
Helix 72
AH9
B
814 819Right-handed 310
Helix 73
AI1
B
829 834Right-handed alpha
Helix 74
AI2
B
850 854Right-handed 310
Helix 75
AI3
A
5 24Right-handed alpha
Helix 76
AI4
A
27 31Right-handed 310
Helix 77
AI5
A
39 44Right-handed alpha
Helix 78
AI6
A
53 58Right-handed alpha
Helix 79
AI7
A
117 122Right-handed alpha
Helix 80
AI8
A
139 143Right-handed 310
Helix 81
AI9
A
144 158Right-handed alpha
Helix 82
AJ1
A
159 161Right-handed 310
Helix 83
AJ2
A
174 179Right-handed alpha
Helix 84
AJ3
A
198 203Right-handed alpha
Helix 85
AJ4
A
257 259Right-handed 310
Helix 86
AJ5
A
263 270Right-handed alpha
Helix 87
AJ6
A
277 283Right-handed alpha
Helix 88
AJ7
A
300 309Right-handed alpha
Helix 89
AJ8
A
348 353Right-handed alpha
Helix 90
AJ9
A
356 364Right-handed alpha
Helix 91
AK1
A
380 385Right-handed alpha
Helix 92
AK2
A
466 477Right-handed alpha
Helix 93
AK3
A
496 499Right-handed 310
Helix 94
AK4
A
500 505Right-handed alpha
Helix 95
AK5
A
523 533Right-handed alpha
Helix 96
AK6
A
553 558Right-handed alpha
Helix 97
AK7
A
650 659Right-handed alpha
Helix 98
AK8
A
672 685Right-handed alpha
Helix 99
AK9
A
687 692Right-handed alpha
Helix 100
AL1
A
698 704Right-handed alpha
Helix 101
AL2
A
706 712Right-handed alpha
Helix 102
AL3
A
721 730Right-handed alpha
Helix 103
AL4
A
739 743Right-handed 310
Helix 104
AL5
A
748 752Right-handed 310
Helix 105
AL6
A
773 782Right-handed alpha
Helix 106
AL7
A
790 809Right-handed alpha
Helix 107
AL8
A
814 819Right-handed 310
Helix 108
AL9
A
829 834Right-handed alpha
Helix 109
AM1
A
850 854Right-handed 310
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There are 15 sheets in PDB entry 6TQM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
460 462first strand
Strand 2
F
632 634parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
509 511first strand
Strand 2
F
481 484parallel
Strand 3
F
539 541parallel
Strand 4
F
591 593parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
609 612first strand
Strand 2
F
619 622anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
460 462first strand
Strand 2
C
632 634parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
482 484first strand
Strand 2
C
539 541parallel
Strand 3
C
591 593parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 92first strand
Strand 2
B
97 98anti-parallel
Strand 3
B
443 445anti-parallel
Strand 4
A
393 396parallel
Strand 5
A
370 372parallel
Strand 6
A
217 221parallel
Strand 7
A
249 255parallel
Strand 8
A
343 346parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 102first strand
Strand 2
B
440 441anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 168first strand
Strand 2
B
133 135parallel
Strand 3
B
106 109parallel
Strand 4
B
190 193parallel
Strand 5
B
210 212parallel
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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
343 346first strand
Strand 2
B
249 255parallel
Strand 3
B
217 221parallel
Strand 4
B
370 372parallel
Strand 5
B
393 396parallel
Strand 6
A
443 445parallel
Strand 7
A
97 98anti-parallel
Strand 8
A
91 92anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
460 462first strand
Strand 2
B
632 634parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
509 511first strand
Strand 2
B
481 484parallel
Strand 3
B
539 541parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 102first strand
Strand 2
A
440 441anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 168first strand
Strand 2
A
133 135parallel
Strand 3
A
106 109parallel
Strand 4
A
190 193parallel
Strand 5
A
210 212parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
460 462first strand
Strand 2
A
632 634parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
509 511first strand
Strand 2
A
481 484parallel
Strand 3
A
539 541parallel
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