Analysis of interatomic Contacts of Structural Units in PDB entry:
6TQR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TQR entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 9 chains in PDB entry 6TQR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 9ASN 134
B
 ALA 9ASN 134
C
 ALA 9ASN 134
D
 ALA 9ASN 134
E
 GLY 205TYR 208
E
 PRO 210GLU 212
E
 PHE 214ALA 215
F
 GLY 205TYR 208
F
 PRO 210PRO 211
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 6TQR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
108 116Right-handed alpha
Helix 2
AA2
A
117 121Right-handed 310
Helix 3
AA3
B
109 115Right-handed alpha
Helix 4
AA4
B
117 121Right-handed 310
Helix 5
AA5
C
108 115Right-handed alpha
Helix 6
AA6
D
55 57Right-handed 310
Helix 7
AA7
D
108 115Right-handed alpha
Helix 8
AA8
D
117 121Right-handed 310
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There are 8 sheets in PDB entry 6TQR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
33 40anti-parallel
Strand 3
A
73 80anti-parallel
Strand 4
A
59 62anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 26first strand
Strand 2
A
122 131parallel
Strand 3
A
94 101anti-parallel
Strand 4
A
47 53anti-parallel
Strand 5
A
65 68anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 18first strand
Strand 2
B
33 40anti-parallel
Strand 3
B
73 80anti-parallel
Strand 4
B
59 62anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 26first strand
Strand 2
B
122 131parallel
Strand 3
B
94 101anti-parallel
Strand 4
B
47 53anti-parallel
Strand 5
B
65 68anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 18first strand
Strand 2
C
33 40anti-parallel
Strand 3
C
73 80anti-parallel
Strand 4
C
59 62anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
22 26first strand
Strand 2
C
122 131parallel
Strand 3
C
94 101anti-parallel
Strand 4
C
47 53anti-parallel
Strand 5
C
65 68anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
16 18first strand
Strand 2
D
33 40anti-parallel
Strand 3
D
73 80anti-parallel
Strand 4
D
59 62anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
22 26first strand
Strand 2
D
122 131parallel
Strand 3
D
94 101anti-parallel
Strand 4
D
47 53anti-parallel
Strand 5
D
65 68anti-parallel
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