Analysis of interatomic Contacts of Structural Units in PDB entry:
6TR4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TR4 entry

There are 2 chains in PDB entry 6TR4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 7PRO 512
B
 ASN 7PRO 512
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 6TR4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 39Right-handed alpha
Helix 2
AA2
A
47 52Right-handed 310
Helix 3
AA3
A
64 69Right-handed alpha
Helix 4
AA4
A
76 87Right-handed alpha
Helix 5
AA5
A
114 118Right-handed 310
Helix 6
AA6
A
127 139Right-handed alpha
Helix 7
AA7
A
168 172Right-handed 310
Helix 8
AA8
A
175 189Right-handed alpha
Helix 9
AA9
A
194 198Right-handed 310
Helix 10
AB1
A
218 231Right-handed alpha
Helix 11
AB2
A
232 235Right-handed 310
Helix 12
AB3
A
245 249Right-handed 310
Helix 13
AB4
A
320 331Right-handed alpha
Helix 14
AB5
A
332 335Right-handed 310
Helix 15
AB6
A
351 369Right-handed alpha
Helix 16
AB7
A
372 376Right-handed 310
Helix 17
AB8
A
386 399Right-handed 310
Helix 18
AB9
A
437 440Right-handed 310
Helix 19
AC1
A
506 510Right-handed 310
Helix 20
AC2
B
29 39Right-handed alpha
Helix 21
AC3
B
47 52Right-handed 310
Helix 22
AC4
B
64 69Right-handed alpha
Helix 23
AC5
B
76 87Right-handed alpha
Helix 24
AC6
B
113 118Right-handed alpha
Helix 25
AC7
B
127 140Right-handed alpha
Helix 26
AC8
B
168 172Right-handed 310
Helix 27
AC9
B
175 189Right-handed alpha
Helix 28
AD1
B
194 198Right-handed 310
Helix 29
AD2
B
218 231Right-handed alpha
Helix 30
AD3
B
232 235Right-handed 310
Helix 31
AD4
B
245 249Right-handed 310
Helix 32
AD5
B
320 331Right-handed alpha
Helix 33
AD6
B
332 335Right-handed 310
Helix 34
AD7
B
351 369Right-handed alpha
Helix 35
AD8
B
372 376Right-handed 310
Helix 36
AD9
B
386 400Right-handed 310
Helix 37
AE1
B
437 440Right-handed 310
Helix 38
AE2
B
506 510Right-handed 310
Back to top of page

There are 10 sheets in PDB entry 6TR4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 243first strand
Strand 2
A
201 203parallel
Strand 3
A
142 147parallel
Strand 4
A
91 97parallel
Strand 5
A
40 44parallel
Strand 6
A
337 341parallel
Strand 7
A
298 304parallel
Strand 8
A
251 253parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 279first strand
Strand 2
A
268 272anti-parallel
Strand 3
A
295 296anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 283first strand
Strand 2
A
286 287anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 383first strand
Strand 2
A
415 435anti-parallel
Strand 3
A
496 503anti-parallel
Strand 4
A
407 408anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 383first strand
Strand 2
A
415 435anti-parallel
Strand 3
A
471 488anti-parallel
Strand 4
A
445 451anti-parallel
Strand 5
A
459 464anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 243first strand
Strand 2
B
201 203parallel
Strand 3
B
142 147parallel
Strand 4
B
91 97parallel
Strand 5
B
40 44parallel
Strand 6
B
337 341parallel
Strand 7
B
298 304parallel
Strand 8
B
251 253parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
277 279first strand
Strand 2
B
268 272anti-parallel
Strand 3
B
295 296anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
282 283first strand
Strand 2
B
286 287anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
380 383first strand
Strand 2
B
415 435anti-parallel
Strand 3
B
496 503anti-parallel
Strand 4
B
407 408anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
380 383first strand
Strand 2
B
415 435anti-parallel
Strand 3
B
471 488anti-parallel
Strand 4
B
445 451anti-parallel
Strand 5
B
459 464anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il