Analysis of interatomic Contacts of Structural Units in PDB entry:
6TRF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TRF entry

There is 1 chain in PDB entry 6TRF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 28MET 1403
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 6TRF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 53Right-handed alpha
Helix 2
AA2
A
56 69Right-handed alpha
Helix 3
AA3
A
70 75Right-handed 310
Helix 4
AA4
A
77 92Right-handed alpha
Helix 5
AA5
A
96 110Right-handed alpha
Helix 6
AA6
A
112 126Right-handed alpha
Helix 7
AA7
A
127 131Right-handed 310
Helix 8
AA8
A
194 208Right-handed alpha
Helix 9
AA9
A
292 305Right-handed alpha
Helix 10
AB1
A
306 317Right-handed alpha
Helix 11
AB2
A
318 322Right-handed 310
Helix 12
AB3
A
338 345Right-handed alpha
Helix 13
AB4
A
361 365Right-handed 310
Helix 14
AB5
A
366 385Right-handed alpha
Helix 15
AB6
A
386 388Right-handed 310
Helix 16
AB7
A
390 399Right-handed alpha
Helix 17
AB8
A
400 412Right-handed alpha
Helix 18
AB9
A
420 424Right-handed 310
Helix 19
AC1
A
446 452Right-handed alpha
Helix 20
AC2
A
507 524Right-handed alpha
Helix 21
AC3
A
525 540Right-handed alpha
Helix 22
AC4
A
546 557Right-handed alpha
Helix 23
AC5
A
577 591Right-handed alpha
Helix 24
AC6
A
612 634Right-handed alpha
Helix 25
AC7
A
642 647Right-handed 310
Helix 26
AC8
A
671 679Right-handed alpha
Helix 27
AC9
A
679 684Right-handed alpha
Helix 28
AD1
A
711 728Right-handed alpha
Helix 29
AD2
A
746 756Right-handed alpha
Helix 30
AD3
A
757 760Right-handed 310
Helix 31
AD4
A
765 775Right-handed alpha
Helix 32
AD5
A
781 795Right-handed alpha
Helix 33
AD6
A
821 836Right-handed alpha
Helix 34
AD7
A
836 848Right-handed alpha
Helix 35
AD8
A
855 869Right-handed alpha
Helix 36
AD9
A
921 935Right-handed alpha
Helix 37
AE1
A
1017 1026Right-handed alpha
Helix 38
AE2
A
1076 1078Right-handed 310
Helix 39
AE3
A
1097 1102Right-handed alpha
Helix 40
AE4
A
1208 1225Right-handed alpha
Helix 41
AE5
A
1237 1239Right-handed 310
Helix 42
AE6
A
1240 1255Right-handed alpha
Helix 43
AE7
A
1274 1285Right-handed alpha
Helix 44
AE8
A
1286 1291Right-handed alpha
Helix 45
AE9
A
1311 1317Right-handed alpha
Helix 46
AF1
A
1336 1343Right-handed 310
Helix 47
AF2
A
1344 1351Right-handed alpha
Helix 48
AF3
A
1365 1373Right-handed alpha
Helix 49
AF4
A
1373 1386Right-handed alpha
Helix 50
AF5
A
1394 1403Right-handed alpha
Helix 51
AF6
A
1413 1417Right-handed 310
Helix 52
AF7
A
1426 1431Right-handed 310
Helix 53
AF8
A
1445 1454Right-handed alpha
Helix 54
AF9
A
1456 1473Right-handed alpha
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There are 11 sheets in PDB entry 6TRF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
980 983first strand
Strand 2
A
31 37anti-parallel
Strand 3
A
1030 1039parallel
Strand 4
A
1002 1006anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 149first strand
Strand 2
A
141 144anti-parallel
Strand 3
A
181 187anti-parallel
Strand 4
A
210 216parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
958 963first strand
Strand 2
A
232 238anti-parallel
Strand 3
A
992 997anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 360first strand
Strand 2
A
352 355anti-parallel
Strand 3
A
910 916anti-parallel
Strand 4
A
939 945parallel
Strand 5
A
899 902anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
599 602first strand
Strand 2
A
605 608anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
731 734first strand
Strand 2
A
701 706parallel
Strand 3
A
803 806anti-parallel
Strand 4
A
809 811anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1080 1085first strand
Strand 2
A
1039 1044anti-parallel
Strand 3
A
1132 1134parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1046 1048first strand
Strand 2
A
1137 1140parallel
Strand 3
A
1103 1107anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1070 1073first strand
Strand 2
A
1058 1062anti-parallel
Strand 3
A
1088 1094anti-parallel
Strand 4
A
1123 1126anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1200 1204first strand
Strand 2
A
1230 1235parallel
Strand 3
A
1257 1261parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1298 1301first strand
Strand 2
A
1357 1364anti-parallel
Strand 3
A
1324 1328anti-parallel
Strand 4
A
1409 1412parallel
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