Analysis of interatomic Contacts of Structural Units in PDB entry:
6TRL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TRL entry

There are 2 chains in PDB entry 6TRL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 16VAL 365
B
 GLY 16VAL 365
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 6TRL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 35Right-handed alpha
Helix 2
AA2
A
77 85Right-handed alpha
Helix 3
AA3
A
85 95Right-handed alpha
Helix 4
AA4
A
110 116Right-handed alpha
Helix 5
AA5
A
134 150Right-handed alpha
Helix 6
AA6
A
206 208Right-handed 310
Helix 7
AA7
A
209 229Right-handed alpha
Helix 8
AA8
A
231 235Right-handed 310
Helix 9
AA9
A
290 305Right-handed alpha
Helix 10
AB1
A
310 313Right-handed 310
Helix 11
AB2
A
314 320Right-handed alpha
Helix 12
AB3
A
320 325Right-handed alpha
Helix 13
AB4
A
339 341Right-handed 310
Helix 14
AB5
A
342 357Right-handed alpha
Helix 15
AB6
B
29 35Right-handed alpha
Helix 16
AB7
B
77 85Right-handed alpha
Helix 17
AB8
B
85 95Right-handed alpha
Helix 18
AB9
B
110 116Right-handed alpha
Helix 19
AC1
B
134 150Right-handed alpha
Helix 20
AC2
B
208 229Right-handed alpha
Helix 21
AC3
B
231 235Right-handed 310
Helix 22
AC4
B
282 304Right-handed alpha
Helix 23
AC5
B
310 313Right-handed 310
Helix 24
AC6
B
314 320Right-handed alpha
Helix 25
AC7
B
320 325Right-handed alpha
Helix 26
AC8
B
339 341Right-handed 310
Helix 27
AC9
B
342 357Right-handed alpha
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There are 8 sheets in PDB entry 6TRL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
19 25parallel
Strand 3
A
330 336parallel
Strand 4
A
98 105parallel
Strand 5
A
254 265parallel
Strand 6
A
236 248anti-parallel
Strand 7
A
153 164anti-parallel
Strand 8
A
167 170anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
19 25parallel
Strand 3
A
330 336parallel
Strand 4
A
98 105parallel
Strand 5
A
254 265parallel
Strand 6
A
236 248anti-parallel
Strand 7
A
153 164anti-parallel
Strand 8
A
202 204anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
49 52anti-parallel
Strand 3
A
64 67anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 186first strand
Strand 2
A
194 197anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 72first strand
Strand 2
B
19 25parallel
Strand 3
B
330 336parallel
Strand 4
B
98 105parallel
Strand 5
B
255 265parallel
Strand 6
B
236 247anti-parallel
Strand 7
B
153 164anti-parallel
Strand 8
B
167 170anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 72first strand
Strand 2
B
19 25parallel
Strand 3
B
330 336parallel
Strand 4
B
98 105parallel
Strand 5
B
255 265parallel
Strand 6
B
236 247anti-parallel
Strand 7
B
153 164anti-parallel
Strand 8
B
202 204anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 44first strand
Strand 2
B
49 53anti-parallel
Strand 3
B
63 67anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 186first strand
Strand 2
B
194 197anti-parallel
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