Analysis of interatomic Contacts of Structural Units in PDB entry:
6TRQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6TRQ entry

There are 4 chains in PDB entry 6TRQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 7	VAL 346
B	GLY 6	LYS 344
C	GLY 6	ILE 345
D	GLY 6	PRO 251

There are 62 helices in PDB entry 6TRQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	15	Right-handed alpha
Helix 2	AA2	A	120	128	Right-handed alpha
Helix 3	AA3	A	138	145	Right-handed alpha
Helix 4	AA4	A	145	153	Right-handed alpha
Helix 5	AA5	A	159	168	Right-handed alpha
Helix 6	AA6	A	171	175	Right-handed 310
Helix 7	AA7	A	201	204	Right-handed 310
Helix 8	AA8	A	218	222	Right-handed 310
Helix 9	AA9	A	223	225	Right-handed 310
Helix 10	AB1	A	226	245	Right-handed alpha
Helix 11	AB2	A	250	252	Right-handed 310
Helix 12	AB3	A	291	299	Right-handed alpha
Helix 13	AB4	A	304	309	Right-handed 310
Helix 14	AB5	A	319	325	Right-handed alpha
Helix 15	AB6	A	325	337	Right-handed alpha
Helix 16	AB7	B	7	15	Right-handed alpha
Helix 17	AB8	B	66	70	Right-handed 310
Helix 18	AB9	B	120	128	Right-handed alpha
Helix 19	AC1	B	138	153	Right-handed alpha
Helix 20	AC2	B	161	168	Right-handed alpha
Helix 21	AC3	B	181	185	Right-handed 310
Helix 22	AC4	B	201	204	Right-handed 310
Helix 23	AC5	B	218	222	Right-handed 310
Helix 24	AC6	B	223	225	Right-handed 310
Helix 25	AC7	B	226	245	Right-handed alpha
Helix 26	AC8	B	250	252	Right-handed 310
Helix 27	AC9	B	280	284	Right-handed 310
Helix 28	AD1	B	291	299	Right-handed alpha
Helix 29	AD2	B	304	309	Right-handed 310
Helix 30	AD3	B	319	325	Right-handed alpha
Helix 31	AD4	B	325	338	Right-handed alpha
Helix 32	AD5	C	7	15	Right-handed alpha
Helix 33	AD6	C	120	128	Right-handed alpha
Helix 34	AD7	C	138	145	Right-handed alpha
Helix 35	AD8	C	145	154	Right-handed alpha
Helix 36	AD9	C	159	169	Right-handed alpha
Helix 37	AE1	C	171	175	Right-handed 310
Helix 38	AE2	C	201	204	Right-handed 310
Helix 39	AE3	C	218	222	Right-handed 310
Helix 40	AE4	C	223	225	Right-handed 310
Helix 41	AE5	C	226	245	Right-handed alpha
Helix 42	AE6	C	250	252	Right-handed 310
Helix 43	AE7	C	291	302	Right-handed alpha
Helix 44	AE8	C	304	309	Right-handed 310
Helix 45	AE9	C	319	324	Right-handed alpha
Helix 46	AF1	C	325	337	Right-handed alpha
Helix 47	AF2	D	7	15	Right-handed alpha
Helix 48	AF3	D	120	128	Right-handed alpha
Helix 49	AF4	D	138	145	Right-handed alpha
Helix 50	AF5	D	145	153	Right-handed alpha
Helix 51	AF6	D	161	168	Right-handed alpha
Helix 52	AF7	D	182	186	Right-handed 310
Helix 53	AF8	D	201	204	Right-handed 310
Helix 54	AF9	D	218	222	Right-handed 310
Helix 55	AG1	D	223	225	Right-handed 310
Helix 56	AG2	D	226	245	Right-handed alpha
Helix 57	AG3	D	250	252	Right-handed 310
Helix 58	AG4	D	280	284	Right-handed 310
Helix 59	AG5	D	291	298	Right-handed alpha
Helix 60	AG6	D	304	309	Right-handed 310
Helix 61	AG7	D	319	325	Right-handed alpha
Helix 62	AG8	D	325	338	Right-handed alpha

There are 12 sheets in PDB entry 6TRQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	24	first strand
Strand 2	A	29	36	anti-parallel
Strand 3	A	39	47	anti-parallel
Strand 4	A	111	116	anti-parallel
Strand 5	B	94	101	anti-parallel
Strand 6	B	82	91	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	91	first strand
Strand 2	A	94	101	anti-parallel
Strand 3	B	111	116	anti-parallel
Strand 4	B	39	47	anti-parallel
Strand 5	B	29	36	anti-parallel
Strand 6	B	16	24	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	137	first strand
Strand 2	A	311	316	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	179	first strand
Strand 2	A	189	193	anti-parallel
Strand 3	A	206	211	anti-parallel
Strand 4	A	268	273	anti-parallel
Strand 5	A	254	259	anti-parallel
Strand 6	A	288	290	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	137	first strand
Strand 2	B	311	316	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	178	first strand
Strand 2	B	189	193	anti-parallel
Strand 3	B	206	211	anti-parallel
Strand 4	B	268	273	anti-parallel
Strand 5	B	254	259	anti-parallel
Strand 6	B	288	290	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	24	first strand
Strand 2	C	29	36	anti-parallel
Strand 3	C	39	47	anti-parallel
Strand 4	C	111	116	anti-parallel
Strand 5	D	94	101	anti-parallel
Strand 6	D	82	91	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	91	first strand
Strand 2	C	94	101	anti-parallel
Strand 3	D	111	116	anti-parallel
Strand 4	D	39	47	anti-parallel
Strand 5	D	29	36	anti-parallel
Strand 6	D	16	24	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	137	first strand
Strand 2	C	311	316	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	177	179	first strand
Strand 2	C	189	193	anti-parallel
Strand 3	C	206	211	anti-parallel
Strand 4	C	268	273	anti-parallel
Strand 5	C	254	259	anti-parallel
Strand 6	C	288	290	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	137	first strand
Strand 2	D	311	316	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	189	193	first strand
Strand 2	D	206	211	anti-parallel
Strand 3	D	268	273	anti-parallel
Strand 4	D	254	259	anti-parallel
Strand 5	D	288	290	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6TRQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6TRQ