Analysis of interatomic Contacts of Structural Units in PDB entry:
6TRS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TRS entry

There are 3 chains in PDB entry 6TRS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 109GLU 435
B
 SER 105GLY 496
D
 ALA 4ALA 69
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6TRS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
111 122Right-handed alpha
Helix 2
AA2
A
139 161Right-handed alpha
Helix 3
AA3
A
179 189Right-handed alpha
Helix 4
AA4
A
205 214Right-handed alpha
Helix 5
AA5
A
215 238Right-handed alpha
Helix 6
AA6
A
255 268Right-handed alpha
Helix 7
AA7
A
281 293Right-handed alpha
Helix 8
AA8
A
310 315Right-handed alpha
Helix 9
AA9
A
352 360Right-handed alpha
Helix 10
AB1
A
378 387Right-handed alpha
Helix 11
AB2
A
391 402Right-handed alpha
Helix 12
AB3
A
404 414Right-handed alpha
Helix 13
AB4
A
420 433Right-handed alpha
Helix 14
AB5
B
111 122Right-handed alpha
Helix 15
AB6
B
139 161Right-handed alpha
Helix 16
AB7
B
179 189Right-handed alpha
Helix 17
AB8
B
205 214Right-handed alpha
Helix 18
AB9
B
215 235Right-handed alpha
Helix 19
AC1
B
255 268Right-handed alpha
Helix 20
AC2
B
281 293Right-handed alpha
Helix 21
AC3
B
310 315Right-handed alpha
Helix 22
AC4
B
352 360Right-handed alpha
Helix 23
AC5
B
378 387Right-handed alpha
Helix 24
AC6
B
391 402Right-handed alpha
Helix 25
AC7
B
404 414Right-handed alpha
Helix 26
AC8
B
420 435Right-handed alpha
Helix 27
AC9
B
450 465Right-handed alpha
Helix 28
AD1
B
484 489Right-handed alpha
Helix 29
AD2
D
13 25Right-handed alpha
Helix 30
AD3
D
45 59Right-handed alpha
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There are 8 sheets in PDB entry 6TRS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 194first strand
Strand 2
A
202 204anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 276first strand
Strand 2
A
306 309anti-parallel
Strand 3
A
297 298anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 340first strand
Strand 2
A
345 349anti-parallel
Strand 3
A
372 376anti-parallel
Strand 4
A
364 367anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 193first strand
Strand 2
B
203 204anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
275 276first strand
Strand 2
B
306 309anti-parallel
Strand 3
B
297 298anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
338 340first strand
Strand 2
B
345 349anti-parallel
Strand 3
B
372 376anti-parallel
Strand 4
B
364 367anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
440 441first strand
Strand 2
D
8 11anti-parallel
Strand 3
D
39 42anti-parallel
Strand 4
D
33 34anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
443 445first strand
Strand 2
B
476 479anti-parallel
Strand 3
B
467 471anti-parallel
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