Analysis of interatomic Contacts of Structural Units in PDB entry:
6TRU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TRU entry

There are 4 chains in PDB entry 6TRU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 TYR 10SER 319
A
 GLN 11SER 319
C
 TYR 10SER 318
D
 TYR 10SER 318
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 6TRU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
10 18Right-handed alpha
Helix 2
AA2
B
20 28Right-handed alpha
Helix 3
AA3
B
30 41Right-handed alpha
Helix 4
AA4
B
43 56Right-handed alpha
Helix 5
AA5
B
61 70Right-handed alpha
Helix 6
AA6
B
82 93Right-handed alpha
Helix 7
AA7
B
106 118Right-handed alpha
Helix 8
AA8
B
122 126Right-handed 310
Helix 9
AA9
B
139 160Right-handed alpha
Helix 10
AB1
B
179 190Right-handed alpha
Helix 11
AB2
B
205 214Right-handed alpha
Helix 12
AB3
B
215 239Right-handed alpha
Helix 13
AB4
B
255 268Right-handed alpha
Helix 14
AB5
B
281 286Right-handed alpha
Helix 15
AB6
B
287 295Right-handed alpha
Helix 16
AB7
B
310 315Right-handed alpha
Helix 17
AB8
B
316 319Right-handed 310
Helix 18
AB9
A
12 18Right-handed alpha
Helix 19
AC1
A
20 28Right-handed alpha
Helix 20
AC2
A
30 41Right-handed alpha
Helix 21
AC3
A
43 55Right-handed alpha
Helix 22
AC4
A
62 67Right-handed alpha
Helix 23
AC5
A
80 93Right-handed alpha
Helix 24
AC6
A
106 119Right-handed alpha
Helix 25
AC7
A
120 125Right-handed alpha
Helix 26
AC8
A
139 161Right-handed alpha
Helix 27
AC9
A
179 189Right-handed alpha
Helix 28
AD1
A
205 214Right-handed alpha
Helix 29
AD2
A
215 238Right-handed alpha
Helix 30
AD3
A
255 269Right-handed alpha
Helix 31
AD4
A
281 286Right-handed alpha
Helix 32
AD5
A
287 294Right-handed alpha
Helix 33
AD6
A
310 315Right-handed alpha
Helix 34
AD7
C
11 18Right-handed alpha
Helix 35
AD8
C
20 28Right-handed alpha
Helix 36
AD9
C
30 41Right-handed alpha
Helix 37
AE1
C
43 55Right-handed alpha
Helix 38
AE2
C
61 67Right-handed alpha
Helix 39
AE3
C
82 93Right-handed alpha
Helix 40
AE4
C
106 119Right-handed alpha
Helix 41
AE5
C
120 125Right-handed alpha
Helix 42
AE6
C
139 161Right-handed alpha
Helix 43
AE7
C
179 189Right-handed alpha
Helix 44
AE8
C
205 214Right-handed alpha
Helix 45
AE9
C
215 238Right-handed alpha
Helix 46
AF1
C
255 269Right-handed alpha
Helix 47
AF2
C
278 280Right-handed 310
Helix 48
AF3
C
281 286Right-handed alpha
Helix 49
AF4
C
287 294Right-handed alpha
Helix 50
AF5
C
310 315Right-handed alpha
Helix 51
AF6
D
11 18Right-handed alpha
Helix 52
AF7
D
20 28Right-handed alpha
Helix 53
AF8
D
30 41Right-handed alpha
Helix 54
AF9
D
43 56Right-handed alpha
Helix 55
AG1
D
61 70Right-handed alpha
Helix 56
AG2
D
82 93Right-handed alpha
Helix 57
AG3
D
106 118Right-handed alpha
Helix 58
AG4
D
122 126Right-handed 310
Helix 59
AG5
D
139 160Right-handed alpha
Helix 60
AG6
D
179 190Right-handed alpha
Helix 61
AG7
D
205 214Right-handed alpha
Helix 62
AG8
D
215 235Right-handed alpha
Helix 63
AG9
D
256 268Right-handed alpha
Helix 64
AH1
D
278 280Right-handed 310
Helix 65
AH2
D
281 286Right-handed alpha
Helix 66
AH3
D
287 295Right-handed alpha
Helix 67
AH4
D
310 316Right-handed alpha
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There are 10 sheets in PDB entry 6TRU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 99first strand
Strand 2
B
102 103anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 194first strand
Strand 2
B
202 204anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
275 276first strand
Strand 2
B
306 309anti-parallel
Strand 3
B
297 298anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
102 103anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 193first strand
Strand 2
A
203 204anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 276first strand
Strand 2
A
306 309anti-parallel
Strand 3
A
297 298anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
192 193first strand
Strand 2
C
203 204anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
275 276first strand
Strand 2
C
306 309anti-parallel
Strand 3
C
297 298anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
192 194first strand
Strand 2
D
202 204anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
275 276first strand
Strand 2
D
306 309anti-parallel
Strand 3
D
297 298anti-parallel
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