Analysis of interatomic Contacts of Structural Units in PDB entry:
6TRY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TRY entry

There are 2 chains in PDB entry 6TRY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 26GLY 508
B
 LEU 27GLY 508
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 6TRY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
67 83Right-handed alpha
Helix 2
AA2
A
86 91Right-handed alpha
Helix 3
AA3
A
92 109Right-handed alpha
Helix 4
AA4
A
110 123Right-handed alpha
Helix 5
AA5
A
125 132Right-handed alpha
Helix 6
AA6
A
132 148Right-handed alpha
Helix 7
AA7
A
149 151Right-handed 310
Helix 8
AA8
A
182 197Right-handed alpha
Helix 9
AA9
A
210 223Right-handed alpha
Helix 10
AB1
A
239 246Right-handed alpha
Helix 11
AB2
A
258 273Right-handed alpha
Helix 12
AB3
A
294 308Right-handed alpha
Helix 13
AB4
A
309 312Right-handed 310
Helix 14
AB5
A
326 340Right-handed alpha
Helix 15
AB6
A
358 368Right-handed alpha
Helix 16
AB7
A
370 375Right-handed alpha
Helix 17
AB8
A
405 409Right-handed 310
Helix 18
AB9
A
424 434Right-handed alpha
Helix 19
AC1
A
447 458Right-handed alpha
Helix 20
AC2
A
480 482Right-handed 310
Helix 21
AC3
A
490 497Right-handed alpha
Helix 22
AC4
B
67 83Right-handed alpha
Helix 23
AC5
B
86 91Right-handed alpha
Helix 24
AC6
B
92 110Right-handed alpha
Helix 25
AC7
B
110 123Right-handed alpha
Helix 26
AC8
B
125 132Right-handed alpha
Helix 27
AC9
B
132 146Right-handed alpha
Helix 28
AD1
B
147 151Right-handed 310
Helix 29
AD2
B
182 197Right-handed alpha
Helix 30
AD3
B
210 224Right-handed alpha
Helix 31
AD4
B
239 246Right-handed alpha
Helix 32
AD5
B
258 273Right-handed alpha
Helix 33
AD6
B
294 308Right-handed alpha
Helix 34
AD7
B
309 312Right-handed 310
Helix 35
AD8
B
326 340Right-handed alpha
Helix 36
AD9
B
358 376Right-handed alpha
Helix 37
AE1
B
405 409Right-handed 310
Helix 38
AE2
B
424 433Right-handed alpha
Helix 39
AE3
B
447 458Right-handed alpha
Helix 40
AE4
B
480 482Right-handed 310
Helix 41
AE5
B
491 497Right-handed alpha
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There are 9 sheets in PDB entry 6TRY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
39 41anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 52first strand
Strand 2
A
59 64anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 156first strand
Strand 2
A
162 170anti-parallel
Strand 3
A
498 506anti-parallel
Strand 4
B
462 465parallel
Strand 5
B
440 444parallel
Strand 6
B
285 289parallel
Strand 7
B
317 323parallel
Strand 8
B
416 422parallel
Strand 9
B
396 398parallel
Strand 10
B
379 381anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 232first strand
Strand 2
A
200 204parallel
Strand 3
A
173 177parallel
Strand 4
A
252 256parallel
Strand 5
A
276 280parallel
Strand 6
A
484 485anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 422first strand
Strand 2
A
317 323parallel
Strand 3
A
285 289parallel
Strand 4
A
440 444parallel
Strand 5
A
462 465parallel
Strand 6
B
498 506parallel
Strand 7
B
162 170anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 397first strand
Strand 2
A
416 417parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 36first strand
Strand 2
B
39 41anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 53first strand
Strand 2
B
58 64anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
230 232first strand
Strand 2
B
200 204parallel
Strand 3
B
173 177parallel
Strand 4
B
252 256parallel
Strand 5
B
276 280parallel
Strand 6
B
484 485anti-parallel
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