Analysis of interatomic Contacts of Structural Units in PDB entry:
6TTO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TTO entry

There is 1 chain in PDB entry 6TTO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 35PHE 345
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6TTO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 58Right-handed alpha
Helix 2
AA2
A
69 85Right-handed alpha
Helix 3
AA3
A
87 92Right-handed alpha
Helix 4
AA4
A
93 99Right-handed 310
Helix 5
AA5
A
140 145Right-handed alpha
Helix 6
AA6
A
153 181Right-handed alpha
Helix 7
AA7
A
189 193Right-handed 310
Helix 8
AA8
A
238 241Right-handed 310
Helix 9
AA9
A
258 265Right-handed alpha
Helix 10
AB1
A
302 306Right-handed 310
Helix 11
AB2
A
319 329Right-handed alpha
Helix 12
AB3
A
337 341Right-handed 310
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There are 3 sheets in PDB entry 6TTO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 39first strand
Strand 2
A
60 64parallel
Strand 3
A
253 257anti-parallel
Strand 4
A
223 228anti-parallel
Strand 5
A
284 292anti-parallel
Strand 6
A
194 202anti-parallel
Strand 7
A
125 135anti-parallel
Strand 8
A
112 121anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 218first strand
Strand 2
A
273 277anti-parallel
Strand 3
A
233 237anti-parallel
Strand 4
A
242 245anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 299first strand
Strand 2
A
317 318anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il