Analysis of interatomic Contacts of Structural Units in PDB entry:
6TTR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TTR entry

There are 2 chains in PDB entry 6TTR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 153ALA 343
B
 GLY 149ALA 343
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6TTR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
154 180Right-handed alpha
Helix 2
AA2
A
190 208Right-handed alpha
Helix 3
AA3
A
222 230Right-handed alpha
Helix 4
AA4
A
230 249Right-handed alpha
Helix 5
AA5
A
271 289Right-handed alpha
Helix 6
AA6
A
317 335Right-handed alpha
Helix 7
AA7
B
150 181Right-handed alpha
Helix 8
AA8
B
191 207Right-handed alpha
Helix 9
AA9
B
221 230Right-handed alpha
Helix 10
AB1
B
230 249Right-handed alpha
Helix 11
AB2
B
271 289Right-handed alpha
Helix 12
AB3
B
317 335Right-handed alpha
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There are 2 sheets in PDB entry 6TTR. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 256first strand
Strand 2
A
262 268anti-parallel
Strand 3
A
212 219anti-parallel
Strand 4
A
305 311anti-parallel
Strand 5
A
340 342parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 183first strand
Strand 2
B
188 190anti-parallel
Strand 3
B
254 257parallel
Strand 4
B
262 268anti-parallel
Strand 5
B
212 219anti-parallel
Strand 6
B
305 311anti-parallel
Strand 7
B
340 342parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il