Analysis of interatomic Contacts of Structural Units in PDB entry:
6TUK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TUK entry

There is 1 chain in PDB entry 6TUK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1PRO 393
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6TUK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
10 23Right-handed alpha
Helix 2
AA2
B
42 46Right-handed 310
Helix 3
AA3
B
47 52Right-handed alpha
Helix 4
AA4
B
81 83Right-handed 310
Helix 5
AA5
B
120 131Right-handed alpha
Helix 6
AA6
B
143 156Right-handed alpha
Helix 7
AA7
B
170 175Right-handed alpha
Helix 8
AA8
B
175 181Right-handed alpha
Helix 9
AA9
B
182 187Right-handed 310
Helix 10
AB1
B
228 232Right-handed 310
Helix 11
AB2
B
277 293Right-handed alpha
Helix 12
AB3
B
361 375Right-handed alpha
Helix 13
AB4
B
379 385Right-handed alpha
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There are 7 sheets in PDB entry 6TUK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 72first strand
Strand 2
B
28 33parallel
Strand 3
B
3 7parallel
Strand 4
B
97 100parallel
Strand 5
B
255 257parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 80first strand
Strand 2
B
85 88anti-parallel
Strand 3
B
91 94anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 106first strand
Strand 2
B
224 226anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 192first strand
Strand 2
B
159 163parallel
Strand 3
B
136 140parallel
Strand 4
B
217 220parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
197 200first strand
Strand 2
B
204 207anti-parallel
Strand 3
B
212 214anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
242 244first strand
Strand 2
B
262 266parallel
Strand 3
B
271 273anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
310 315first strand
Strand 2
B
318 324anti-parallel
Strand 3
B
353 359anti-parallel
Strand 4
B
343 347anti-parallel
Strand 5
B
331 335anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il