Analysis of interatomic Contacts of Structural Units in PDB entry:
6TUU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6TUU entry

There are 4 chains in PDB entry 6TUU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 108	ASP 349
B	ALA 108	ASP 349
C	ALA 108	ASP 349
D	ILE 110	ASP 349

There are 39 helices in PDB entry 6TUU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	117	124	Right-handed alpha
Helix 2	AA2	A	143	155	Right-handed alpha
Helix 3	AA3	A	156	157	Right-handed 310
Helix 4	AA4	A	158	162	Right-handed 310
Helix 5	AA5	A	178	189	Right-handed alpha
Helix 6	AA6	A	192	199	Right-handed alpha
Helix 7	AA7	A	207	226	Right-handed alpha
Helix 8	AA8	A	241	248	Right-handed alpha
Helix 9	AA9	A	252	275	Right-handed alpha
Helix 10	AB1	A	319	321	Right-handed 310
Helix 11	AB2	B	117	124	Right-handed alpha
Helix 12	AB3	B	143	155	Right-handed alpha
Helix 13	AB4	B	156	157	Right-handed 310
Helix 14	AB5	B	158	162	Right-handed 310
Helix 15	AB6	B	178	188	Right-handed alpha
Helix 16	AB7	B	192	199	Right-handed alpha
Helix 17	AB8	B	207	226	Right-handed alpha
Helix 18	AB9	B	241	248	Right-handed alpha
Helix 19	AC1	B	252	275	Right-handed alpha
Helix 20	AC2	B	319	321	Right-handed 310
Helix 21	AC3	C	117	124	Right-handed alpha
Helix 22	AC4	C	143	155	Right-handed alpha
Helix 23	AC5	C	156	157	Right-handed 310
Helix 24	AC6	C	158	162	Right-handed 310
Helix 25	AC7	C	178	189	Right-handed alpha
Helix 26	AC8	C	192	199	Right-handed alpha
Helix 27	AC9	C	207	227	Right-handed alpha
Helix 28	AD1	C	241	248	Right-handed alpha
Helix 29	AD2	C	252	275	Right-handed alpha
Helix 30	AD3	C	306	308	Right-handed 310
Helix 31	AD4	D	117	124	Right-handed alpha
Helix 32	AD5	D	143	155	Right-handed alpha
Helix 33	AD6	D	156	157	Right-handed 310
Helix 34	AD7	D	158	162	Right-handed 310
Helix 35	AD8	D	178	189	Right-handed alpha
Helix 36	AD9	D	192	199	Right-handed alpha
Helix 37	AE1	D	207	226	Right-handed alpha
Helix 38	AE2	D	241	248	Right-handed alpha
Helix 39	AE3	D	252	276	Right-handed alpha

There are 8 sheets in PDB entry 6TUU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	113	first strand
Strand 2	A	128	129	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	204	first strand
Strand 2	A	167	172	parallel
Strand 3	A	232	238	parallel
Strand 4	A	278	284	parallel
Strand 5	A	132	138	parallel
Strand 6	A	311	317	parallel
Strand 7	A	323	328	anti-parallel
Strand 8	A	338	343	anti-parallel
Strand 9	A	346	348	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	113	first strand
Strand 2	B	128	129	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	200	204	first strand
Strand 2	B	167	172	parallel
Strand 3	B	232	238	parallel
Strand 4	B	278	284	parallel
Strand 5	B	132	138	parallel
Strand 6	B	311	317	parallel
Strand 7	B	323	328	anti-parallel
Strand 8	B	338	343	anti-parallel
Strand 9	B	346	348	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	113	first strand
Strand 2	C	128	129	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	200	204	first strand
Strand 2	C	167	172	parallel
Strand 3	C	232	238	parallel
Strand 4	C	278	284	parallel
Strand 5	C	132	138	parallel
Strand 6	C	310	317	parallel
Strand 7	C	323	328	anti-parallel
Strand 8	C	338	343	anti-parallel
Strand 9	C	346	348	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	113	first strand
Strand 2	D	128	129	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	200	204	first strand
Strand 2	D	167	172	parallel
Strand 3	D	232	238	parallel
Strand 4	D	278	284	parallel
Strand 5	D	132	138	parallel
Strand 6	D	311	317	parallel
Strand 7	D	322	328	anti-parallel
Strand 8	D	338	343	anti-parallel
Strand 9	D	346	348	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6TUU

Analysis of interatomic Contacts of Structural Units in PDB entry:
6TUU