Analysis of interatomic Contacts of Structural Units in PDB entry:
6TV6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6TV6 entry

There are 8 chains in PDB entry 6TV6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA -1	ASN 193
A	ILE 195	ILE 363
B	ALA -1	ASN 193
B	ILE 195	ASN 354
C	ALA -1	ASN 193
C	ILE 195	ASN 354
D	MET 1	ASN 193
D	ILE 195	ASN 354

There are 68 helices in PDB entry 6TV6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	0	9	Right-handed alpha
Helix 2	AA2	A	12	17	Right-handed alpha
Helix 3	AA3	A	46	61	Right-handed alpha
Helix 4	AA4	A	78	80	Right-handed 310
Helix 5	AA5	A	81	91	Right-handed alpha
Helix 6	AA6	A	95	101	Right-handed alpha
Helix 7	AA7	A	134	151	Right-handed alpha
Helix 8	AA8	A	183	189	Right-handed alpha
Helix 9	AA9	A	191	194	Right-handed 310
Helix 10	AB1	A	195	202	Right-handed alpha
Helix 11	AB2	A	216	218	Right-handed 310
Helix 12	AB3	A	232	262	Right-handed alpha
Helix 13	AB4	A	262	280	Right-handed alpha
Helix 14	AB5	A	284	301	Right-handed alpha
Helix 15	AB6	A	308	319	Right-handed alpha
Helix 16	AB7	A	320	329	Right-handed alpha
Helix 17	AB8	A	333	363	Right-handed alpha
Helix 18	AB9	B	0	9	Right-handed alpha
Helix 19	AC1	B	12	17	Right-handed alpha
Helix 20	AC2	B	46	61	Right-handed alpha
Helix 21	AC3	B	78	80	Right-handed 310
Helix 22	AC4	B	81	91	Right-handed alpha
Helix 23	AC5	B	95	100	Right-handed alpha
Helix 24	AC6	B	134	151	Right-handed alpha
Helix 25	AC7	B	183	189	Right-handed alpha
Helix 26	AC8	B	191	194	Right-handed 310
Helix 27	AC9	B	195	202	Right-handed alpha
Helix 28	AD1	B	216	218	Right-handed 310
Helix 29	AD2	B	232	262	Right-handed alpha
Helix 30	AD3	B	262	280	Right-handed alpha
Helix 31	AD4	B	284	301	Right-handed alpha
Helix 32	AD5	B	308	319	Right-handed alpha
Helix 33	AD6	B	320	329	Right-handed alpha
Helix 34	AD7	B	333	353	Right-handed alpha
Helix 35	AD8	C	0	9	Right-handed alpha
Helix 36	AD9	C	13	17	Right-handed 310
Helix 37	AE1	C	46	61	Right-handed alpha
Helix 38	AE2	C	78	80	Right-handed 310
Helix 39	AE3	C	81	91	Right-handed alpha
Helix 40	AE4	C	95	100	Right-handed alpha
Helix 41	AE5	C	134	151	Right-handed alpha
Helix 42	AE6	C	183	189	Right-handed alpha
Helix 43	AE7	C	191	202	Right-handed alpha
Helix 44	AE8	C	216	218	Right-handed 310
Helix 45	AE9	C	232	262	Right-handed alpha
Helix 46	AF1	C	262	280	Right-handed alpha
Helix 47	AF2	C	284	301	Right-handed alpha
Helix 48	AF3	C	308	319	Right-handed alpha
Helix 49	AF4	C	320	329	Right-handed alpha
Helix 50	AF5	C	333	353	Right-handed alpha
Helix 51	AF6	D	3	9	Right-handed alpha
Helix 52	AF7	D	12	17	Right-handed alpha
Helix 53	AF8	D	46	61	Right-handed alpha
Helix 54	AF9	D	78	80	Right-handed 310
Helix 55	AG1	D	81	91	Right-handed alpha
Helix 56	AG2	D	95	101	Right-handed alpha
Helix 57	AG3	D	134	151	Right-handed alpha
Helix 58	AG4	D	167	171	Right-handed 310
Helix 59	AG5	D	183	189	Right-handed alpha
Helix 60	AG6	D	191	194	Right-handed 310
Helix 61	AG7	D	195	202	Right-handed alpha
Helix 62	AG8	D	216	218	Right-handed 310
Helix 63	AG9	D	232	262	Right-handed alpha
Helix 64	AH1	D	262	280	Right-handed alpha
Helix 65	AH2	D	284	301	Right-handed alpha
Helix 66	AH3	D	308	319	Right-handed alpha
Helix 67	AH4	D	320	329	Right-handed alpha
Helix 68	AH5	D	333	353	Right-handed alpha

There are 8 sheets in PDB entry 6TV6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	66	first strand
Strand 2	A	70	76	anti-parallel
Strand 3	A	105	109	anti-parallel
Strand 4	A	114	118	anti-parallel
Strand 5	A	124	131	anti-parallel
Strand 6	A	25	34	anti-parallel
Strand 7	A	175	182	anti-parallel
Strand 8	A	220	225	anti-parallel
Strand 9	A	204	207	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	158	first strand
Strand 2	A	162	163	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	66	first strand
Strand 2	B	70	76	anti-parallel
Strand 3	B	105	109	anti-parallel
Strand 4	B	114	118	anti-parallel
Strand 5	B	124	131	anti-parallel
Strand 6	B	25	34	anti-parallel
Strand 7	B	175	182	anti-parallel
Strand 8	B	220	225	anti-parallel
Strand 9	B	204	207	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	158	first strand
Strand 2	B	162	163	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	66	first strand
Strand 2	C	70	76	anti-parallel
Strand 3	C	105	109	anti-parallel
Strand 4	C	114	118	anti-parallel
Strand 5	C	124	131	anti-parallel
Strand 6	C	25	34	anti-parallel
Strand 7	C	175	182	anti-parallel
Strand 8	C	220	225	anti-parallel
Strand 9	C	204	207	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	158	first strand
Strand 2	C	162	163	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	66	first strand
Strand 2	D	70	76	anti-parallel
Strand 3	D	105	109	anti-parallel
Strand 4	D	114	118	anti-parallel
Strand 5	D	124	131	anti-parallel
Strand 6	D	25	34	anti-parallel
Strand 7	D	175	182	anti-parallel
Strand 8	D	220	225	anti-parallel
Strand 9	D	204	208	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	158	first strand
Strand 2	D	162	163	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6TV6

Analysis of interatomic Contacts of Structural Units in PDB entry:
6TV6