Analysis of interatomic Contacts of Structural Units in PDB entry:
6TVP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TVP entry

There are 2 chains in PDB entry 6TVP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN -1ALA 387
B
 GLN -1ALA 387
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 6TVP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 30Right-handed alpha
Helix 2
AA2
A
53 57Right-handed 310
Helix 3
AA3
A
60 76Right-handed alpha
Helix 4
AA4
A
86 101Right-handed alpha
Helix 5
AA5
A
111 115Right-handed 310
Helix 6
AA6
A
118 122Right-handed 310
Helix 7
AA7
A
123 140Right-handed alpha
Helix 8
AA8
A
147 158Right-handed alpha
Helix 9
AA9
A
162 164Right-handed 310
Helix 10
AB1
A
189 194Right-handed alpha
Helix 11
AB2
A
209 212Right-handed 310
Helix 12
AB3
A
213 222Right-handed alpha
Helix 13
AB4
A
239 257Right-handed alpha
Helix 14
AB5
A
268 279Right-handed alpha
Helix 15
AB6
A
292 301Right-handed alpha
Helix 16
AB7
A
312 317Right-handed alpha
Helix 17
AB8
A
332 350Right-handed alpha
Helix 18
AB9
A
350 369Right-handed alpha
Helix 19
AC1
A
370 387Right-handed alpha
Helix 20
AC2
B
16 30Right-handed alpha
Helix 21
AC3
B
53 57Right-handed 310
Helix 22
AC4
B
60 76Right-handed alpha
Helix 23
AC5
B
86 101Right-handed alpha
Helix 24
AC6
B
111 115Right-handed 310
Helix 25
AC7
B
118 122Right-handed 310
Helix 26
AC8
B
123 140Right-handed alpha
Helix 27
AC9
B
147 158Right-handed alpha
Helix 28
AD1
B
162 164Right-handed 310
Helix 29
AD2
B
188 194Right-handed alpha
Helix 30
AD3
B
213 222Right-handed alpha
Helix 31
AD4
B
239 257Right-handed alpha
Helix 32
AD5
B
268 279Right-handed alpha
Helix 33
AD6
B
292 301Right-handed alpha
Helix 34
AD7
B
312 317Right-handed alpha
Helix 35
AD8
B
332 349Right-handed alpha
Helix 36
AD9
B
350 369Right-handed alpha
Helix 37
AE1
B
370 387Right-handed alpha
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There are 4 sheets in PDB entry 6TVP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
34 39parallel
Strand 3
A
2 6parallel
Strand 4
A
81 85parallel
Strand 5
A
104 107parallel
Strand 6
A
142 145parallel
Strand 7
A
166 168parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 263first strand
Strand 2
A
229 235parallel
Strand 3
A
201 207parallel
Strand 4
A
281 284parallel
Strand 5
A
304 308parallel
Strand 6
A
323 326parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 50first strand
Strand 2
B
34 40parallel
Strand 3
B
2 6parallel
Strand 4
B
81 85parallel
Strand 5
B
104 108parallel
Strand 6
B
142 145parallel
Strand 7
B
166 168parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 263first strand
Strand 2
B
229 233parallel
Strand 3
B
201 205parallel
Strand 4
B
281 284parallel
Strand 5
B
304 308parallel
Strand 6
B
323 326parallel
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