Analysis of interatomic Contacts of Structural Units in PDB entry:
6TVS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6TVS entry

There are 6 chains in PDB entry 6TVS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ASP 1	LEU 321
D	GLY 1	ASN 172
E	ASP 1	GLU 320
F	GLY 1	ASN 172
K	ASP 1	GLU 320
L	GLY 1	ASN 172

There are 24 helices in PDB entry 6TVS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	57	64	Right-handed alpha
Helix 2	AA2	C	65	72	Right-handed 310
Helix 3	AA3	C	96	106	Right-handed alpha
Helix 4	AA4	C	182	191	Right-handed alpha
Helix 5	AA5	D	37	56	Right-handed alpha
Helix 6	AA6	D	74	127	Right-handed alpha
Helix 7	AA7	D	145	154	Right-handed alpha
Helix 8	AA8	D	158	172	Right-handed alpha
Helix 9	AA9	E	57	64	Right-handed alpha
Helix 10	AB1	E	65	72	Right-handed 310
Helix 11	AB2	E	96	106	Right-handed alpha
Helix 12	AB3	E	182	191	Right-handed alpha
Helix 13	AB4	F	37	56	Right-handed alpha
Helix 14	AB5	F	74	127	Right-handed alpha
Helix 15	AB6	F	145	154	Right-handed alpha
Helix 16	AB7	F	158	172	Right-handed alpha
Helix 17	AB8	K	57	64	Right-handed alpha
Helix 18	AB9	K	65	72	Right-handed 310
Helix 19	AC1	K	96	105	Right-handed alpha
Helix 20	AC2	K	182	191	Right-handed alpha
Helix 21	AC3	L	37	56	Right-handed alpha
Helix 22	AC4	L	74	127	Right-handed alpha
Helix 23	AC5	L	145	154	Right-handed alpha
Helix 24	AC6	L	158	172	Right-handed alpha

There are 33 sheets in PDB entry 6TVS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	36	first strand
Strand 2	D	22	28	anti-parallel
Strand 3	C	3	9	anti-parallel
Strand 4	D	137	140	anti-parallel
Strand 5	D	130	132	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	18	first strand
Strand 2	C	26	28	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	33	first strand
Strand 2	C	310	312	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	36	first strand
Strand 2	C	289	290	parallel
Strand 3	C	302	303	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	44	first strand
Strand 2	C	268	269	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	52	first strand
Strand 2	C	78	81	parallel
Strand 3	C	260	263	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	75	first strand
Strand 2	C	109	114	anti-parallel
Strand 3	C	251	255	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	127	first strand
Strand 2	C	144	149	anti-parallel
Strand 3	C	246	249	anti-parallel
Strand 4	C	171	179	anti-parallel
Strand 5	C	224	232	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	134	first strand
Strand 2	C	137	139	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	164	first strand
Strand 2	C	237	242	anti-parallel
Strand 3	C	197	200	anti-parallel
Strand 4	C	205	208	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	281	282	first strand
Strand 2	C	276	278	anti-parallel
Strand 3	C	296	298	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	36	first strand
Strand 2	F	22	28	anti-parallel
Strand 3	E	3	9	anti-parallel
Strand 4	F	137	140	anti-parallel
Strand 5	F	130	132	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	18	first strand
Strand 2	E	26	28	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	33	first strand
Strand 2	E	310	312	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	36	first strand
Strand 2	E	289	290	parallel
Strand 3	E	302	303	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	44	first strand
Strand 2	E	268	269	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	50	52	first strand
Strand 2	E	78	81	parallel
Strand 3	E	260	263	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	74	75	first strand
Strand 2	E	109	114	anti-parallel
Strand 3	E	251	255	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	123	127	first strand
Strand 2	E	144	149	anti-parallel
Strand 3	E	246	249	anti-parallel
Strand 4	E	171	179	anti-parallel
Strand 5	E	224	232	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	129	134	first strand
Strand 2	E	137	139	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	159	164	first strand
Strand 2	E	237	242	anti-parallel
Strand 3	E	197	200	anti-parallel
Strand 4	E	205	208	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	281	282	first strand
Strand 2	E	276	278	anti-parallel
Strand 3	E	297	298	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	31	36	first strand
Strand 2	L	22	28	anti-parallel
Strand 3	K	3	9	anti-parallel
Strand 4	L	137	140	anti-parallel
Strand 5	L	130	132	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	16	18	first strand
Strand 2	K	26	28	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	31	33	first strand
Strand 2	K	310	312	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	35	36	first strand
Strand 2	K	289	290	parallel
Strand 3	K	302	303	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	43	44	first strand
Strand 2	K	268	269	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	50	52	first strand
Strand 2	K	78	81	parallel
Strand 3	K	260	263	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	74	75	first strand
Strand 2	K	109	114	anti-parallel
Strand 3	K	251	255	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	123	127	first strand
Strand 2	K	144	149	anti-parallel
Strand 3	K	246	249	anti-parallel
Strand 4	K	171	179	anti-parallel
Strand 5	K	224	232	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	129	134	first strand
Strand 2	K	137	139	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	159	164	first strand
Strand 2	K	237	242	anti-parallel
Strand 3	K	197	200	anti-parallel
Strand 4	K	205	208	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	281	282	first strand
Strand 2	K	276	278	anti-parallel
Strand 3	K	297	298	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6TVS

Analysis of interatomic Contacts of Structural Units in PDB entry:
6TVS