Analysis of interatomic Contacts of Structural Units in PDB entry:
6TVV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TVV entry

There are 2 chains in PDB entry 6TVV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0GLN 428
B
 MET 0GLU 427
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 6TVV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 20Right-handed alpha
Helix 2
AA2
A
32 49Right-handed alpha
Helix 3
AA3
A
62 72Right-handed alpha
Helix 4
AA4
A
89 96Right-handed alpha
Helix 5
AA5
A
123 128Right-handed 310
Helix 6
AA6
A
136 146Right-handed alpha
Helix 7
AA7
A
147 149Right-handed 310
Helix 8
AA8
A
150 152Right-handed 310
Helix 9
AA9
A
153 164Right-handed alpha
Helix 10
AB1
A
171 184Right-handed alpha
Helix 11
AB2
A
195 198Right-handed 310
Helix 12
AB3
A
201 209Right-handed alpha
Helix 13
AB4
A
214 218Right-handed 310
Helix 14
AB5
A
219 230Right-handed alpha
Helix 15
AB6
A
240 252Right-handed alpha
Helix 16
AB7
A
257 260Right-handed 310
Helix 17
AB8
A
274 288Right-handed alpha
Helix 18
AB9
A
290 299Right-handed alpha
Helix 19
AC1
A
301 325Right-handed alpha
Helix 20
AC2
A
343 351Right-handed alpha
Helix 21
AC3
A
374 380Right-handed alpha
Helix 22
AC4
A
383 389Right-handed alpha
Helix 23
AC5
A
390 395Right-handed 310
Helix 24
AC6
A
413 424Right-handed alpha
Helix 25
AC7
B
1 20Right-handed alpha
Helix 26
AC8
B
32 49Right-handed alpha
Helix 27
AC9
B
62 72Right-handed alpha
Helix 28
AD1
B
89 96Right-handed alpha
Helix 29
AD2
B
123 128Right-handed 310
Helix 30
AD3
B
136 146Right-handed alpha
Helix 31
AD4
B
147 149Right-handed 310
Helix 32
AD5
B
150 152Right-handed 310
Helix 33
AD6
B
153 164Right-handed alpha
Helix 34
AD7
B
171 184Right-handed alpha
Helix 35
AD8
B
195 198Right-handed 310
Helix 36
AD9
B
201 209Right-handed alpha
Helix 37
AE1
B
214 218Right-handed 310
Helix 38
AE2
B
219 230Right-handed alpha
Helix 39
AE3
B
240 252Right-handed alpha
Helix 40
AE4
B
257 260Right-handed 310
Helix 41
AE5
B
274 288Right-handed alpha
Helix 42
AE6
B
290 299Right-handed alpha
Helix 43
AE7
B
301 325Right-handed alpha
Helix 44
AE8
B
343 351Right-handed alpha
Helix 45
AE9
B
374 380Right-handed alpha
Helix 46
AF1
B
384 389Right-handed alpha
Helix 47
AF2
B
390 392Right-handed 310
Helix 48
AF3
B
413 425Right-handed alpha
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There are 7 sheets in PDB entry 6TVV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 57first strand
Strand 2
A
25 29parallel
Strand 3
A
79 82parallel
Strand 4
A
99 103parallel
Strand 5
A
119 122parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 193first strand
Strand 2
A
262 268anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 330first strand
Strand 2
A
335 338anti-parallel
Strand 3
A
357 363parallel
Strand 4
A
366 372anti-parallel
Strand 5
A
405 410anti-parallel
Strand 6
A
397 398anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 57first strand
Strand 2
B
25 29parallel
Strand 3
B
79 82parallel
Strand 4
B
99 103parallel
Strand 5
B
119 122parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 193first strand
Strand 2
B
262 268anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
329 330first strand
Strand 2
B
335 338anti-parallel
Strand 3
B
357 360parallel
Strand 4
B
369 372anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
366 367first strand
Strand 2
B
409 410anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il