Analysis of interatomic Contacts of Structural Units in PDB entry:
6TWJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TWJ entry

There are 2 chains in PDB entry 6TWJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 3LYS 399
B
 VAL 4VAL 398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 6TWJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 28Right-handed alpha
Helix 2
AA2
A
36 45Right-handed alpha
Helix 3
AA3
A
71 78Right-handed alpha
Helix 4
AA4
A
84 86Right-handed 310
Helix 5
AA5
A
92 96Right-handed 310
Helix 6
AA6
A
102 110Right-handed alpha
Helix 7
AA7
A
110 115Right-handed alpha
Helix 8
AA8
A
132 143Right-handed alpha
Helix 9
AA9
A
153 159Right-handed alpha
Helix 10
AB1
A
163 188Right-handed alpha
Helix 11
AB2
A
193 208Right-handed alpha
Helix 12
AB3
A
230 236Right-handed 310
Helix 13
AB4
A
277 298Right-handed alpha
Helix 14
AB5
A
303 318Right-handed alpha
Helix 15
AB6
B
10 28Right-handed alpha
Helix 16
AB7
B
36 45Right-handed alpha
Helix 17
AB8
B
71 81Right-handed alpha
Helix 18
AB9
B
84 86Right-handed 310
Helix 19
AC1
B
92 96Right-handed 310
Helix 20
AC2
B
102 110Right-handed alpha
Helix 21
AC3
B
110 115Right-handed alpha
Helix 22
AC4
B
132 143Right-handed alpha
Helix 23
AC5
B
153 159Right-handed alpha
Helix 24
AC6
B
163 188Right-handed alpha
Helix 25
AC7
B
193 208Right-handed alpha
Helix 26
AC8
B
230 236Right-handed 310
Helix 27
AC9
B
277 298Right-handed alpha
Helix 28
AD1
B
303 318Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 6TWJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 91first strand
Strand 2
A
66 70parallel
Strand 3
A
56 59anti-parallel
Strand 4
A
31 34anti-parallel
Strand 5
A
120 124parallel
Strand 6
A
146 150parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 210first strand
Strand 2
A
216 217anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 260first strand
Strand 2
A
263 273anti-parallel
Strand 3
A
397 398parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 330first strand
Strand 2
A
359 362anti-parallel
Strand 3
A
377 381anti-parallel
Strand 4
A
386 388anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 367first strand
Strand 2
A
372 373anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 91first strand
Strand 2
B
66 70parallel
Strand 3
B
56 59anti-parallel
Strand 4
B
31 34anti-parallel
Strand 5
B
120 124parallel
Strand 6
B
146 150parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 210first strand
Strand 2
B
216 217anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
250 260first strand
Strand 2
B
263 273anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
328 330first strand
Strand 2
B
359 362anti-parallel
Strand 3
B
377 381anti-parallel
Strand 4
B
386 388anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il