Analysis of interatomic Contacts of Structural Units in PDB entry:
6TWL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TWL entry

There is 1 chain in PDB entry 6TWL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3THR 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 6TWL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
62 75Right-handed alpha
Helix 2
AA2
A
76 80Right-handed 310
Helix 3
AA3
A
108 112Right-handed 310
Helix 4
AA4
A
120 132Right-handed alpha
Helix 5
AA5
A
166 178Right-handed alpha
Helix 6
AA6
A
193 202Right-handed alpha
Helix 7
AA7
A
217 235Right-handed alpha
Helix 8
AA8
A
254 256Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 6TWL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 8first strand
Strand 2
A
16 24anti-parallel
Strand 3
A
36 45anti-parallel
Strand 4
A
82 87anti-parallel
Strand 5
A
50 54parallel
Strand 6
A
139 142parallel
Strand 7
A
204 209parallel
Strand 8
A
155 158anti-parallel
Strand 9
A
181 184parallel
Strand 10
A
248 251parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 152first strand
Strand 2
A
305 311anti-parallel
Strand 3
A
321 326anti-parallel
Strand 4
A
258 260anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 152first strand
Strand 2
A
305 311anti-parallel
Strand 3
A
276 277anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 300first strand
Strand 2
A
282 287anti-parallel
Strand 3
A
265 269anti-parallel
Strand 4
A
315 316anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il