Analysis of interatomic Contacts of Structural Units in PDB entry:
6TXF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TXF entry

There are 2 chains in PDB entry 6TXF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 114ASN 599
B
 THR 114ASN 599
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 6TXF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
129 137Right-handed alpha
Helix 2
AA2
A
138 143Right-handed alpha
Helix 3
AA3
A
144 147Right-handed 310
Helix 4
AA4
A
150 156Right-handed 310
Helix 5
AA5
A
163 186Right-handed alpha
Helix 6
AA6
A
187 190Right-handed 310
Helix 7
AA7
A
192 206Right-handed alpha
Helix 8
AA8
A
214 220Right-handed alpha
Helix 9
AA9
A
220 226Right-handed alpha
Helix 10
AB1
A
232 248Right-handed alpha
Helix 11
AB2
A
249 257Right-handed alpha
Helix 12
AB3
A
260 274Right-handed alpha
Helix 13
AB4
A
291 300Right-handed 310
Helix 14
AB5
A
309 324Right-handed alpha
Helix 15
AB6
A
330 337Right-handed alpha
Helix 16
AB7
A
355 373Right-handed alpha
Helix 17
AB8
A
376 394Right-handed alpha
Helix 18
AB9
A
402 404Right-handed 310
Helix 19
AC1
A
411 414Right-handed 310
Helix 20
AC2
A
415 420Right-handed alpha
Helix 21
AC3
A
421 423Right-handed 310
Helix 22
AC4
A
424 433Right-handed alpha
Helix 23
AC5
A
435 437Right-handed 310
Helix 24
AC6
A
438 450Right-handed alpha
Helix 25
AC7
A
470 474Right-handed 310
Helix 26
AC8
A
475 482Right-handed alpha
Helix 27
AC9
A
494 496Right-handed 310
Helix 28
AD1
A
513 518Right-handed 310
Helix 29
AD2
A
533 537Right-handed 310
Helix 30
AD3
A
558 577Right-handed alpha
Helix 31
AD4
A
583 588Right-handed alpha
Helix 32
AD5
A
591 599Right-handed 310
Helix 33
AD6
B
129 137Right-handed alpha
Helix 34
AD7
B
138 143Right-handed alpha
Helix 35
AD8
B
144 147Right-handed 310
Helix 36
AD9
B
150 156Right-handed 310
Helix 37
AE1
B
163 186Right-handed alpha
Helix 38
AE2
B
187 190Right-handed 310
Helix 39
AE3
B
192 206Right-handed alpha
Helix 40
AE4
B
214 220Right-handed alpha
Helix 41
AE5
B
220 226Right-handed alpha
Helix 42
AE6
B
232 248Right-handed alpha
Helix 43
AE7
B
249 257Right-handed alpha
Helix 44
AE8
B
260 274Right-handed alpha
Helix 45
AE9
B
291 300Right-handed 310
Helix 46
AF1
B
309 324Right-handed alpha
Helix 47
AF2
B
330 337Right-handed alpha
Helix 48
AF3
B
355 373Right-handed alpha
Helix 49
AF4
B
376 394Right-handed alpha
Helix 50
AF5
B
402 404Right-handed 310
Helix 51
AF6
B
411 414Right-handed 310
Helix 52
AF7
B
415 420Right-handed alpha
Helix 53
AF8
B
421 423Right-handed 310
Helix 54
AF9
B
424 433Right-handed alpha
Helix 55
AG1
B
435 437Right-handed 310
Helix 56
AG2
B
438 450Right-handed alpha
Helix 57
AG3
B
470 474Right-handed 310
Helix 58
AG4
B
475 482Right-handed alpha
Helix 59
AG5
B
494 496Right-handed 310
Helix 60
AG6
B
513 518Right-handed 310
Helix 61
AG7
B
533 537Right-handed 310
Helix 62
AG8
B
558 576Right-handed alpha
Helix 63
AG9
B
583 588Right-handed alpha
Helix 64
AH1
B
595 599Right-handed 310
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There are 8 sheets in PDB entry 6TXF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 120first strand
Strand 2
A
124 128anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 343first strand
Strand 2
A
346 352anti-parallel
Strand 3
A
520 522parallel
Strand 4
A
525 530anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
399 400first strand
Strand 2
A
406 407anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
455 460first strand
Strand 2
A
546 554anti-parallel
Strand 3
A
498 506anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 120first strand
Strand 2
B
124 128anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
338 343first strand
Strand 2
B
346 352anti-parallel
Strand 3
B
520 522parallel
Strand 4
B
525 530anti-parallel
Strand 5
B
338 343parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
399 400first strand
Strand 2
B
406 407anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
455 460first strand
Strand 2
B
546 554anti-parallel
Strand 3
B
498 506anti-parallel
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