Analysis of interatomic Contacts of Structural Units in PDB entry:
6TY4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6TY4 entry

There are 2 chains in PDB entry 6TY4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 34	GLN 686
B	GLU 34	GLN 686

There are 44 helices in PDB entry 6TY4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	63	74	Right-handed alpha
Helix 2	AA2	A	103	111	Right-handed alpha
Helix 3	AA3	A	132	139	Right-handed alpha
Helix 4	AA4	A	140	159	Right-handed alpha
Helix 5	AA5	A	164	180	Right-handed alpha
Helix 6	AA6	A	186	189	Right-handed 310
Helix 7	AA7	A	190	200	Right-handed alpha
Helix 8	AA8	A	208	213	Right-handed alpha
Helix 9	AA9	A	216	229	Right-handed alpha
Helix 10	AB1	A	235	248	Right-handed alpha
Helix 11	AB2	A	295	299	Right-handed 310
Helix 12	AB3	A	333	352	Right-handed alpha
Helix 13	AB4	A	461	476	Right-handed alpha
Helix 14	AB5	A	507	514	Right-handed alpha
Helix 15	AB6	A	515	518	Right-handed 310
Helix 16	AB7	A	519	541	Right-handed alpha
Helix 17	AB8	A	548	550	Right-handed 310
Helix 18	AB9	A	590	597	Right-handed alpha
Helix 19	AC1	A	600	617	Right-handed alpha
Helix 20	AC2	A	627	637	Right-handed alpha
Helix 21	AC3	A	648	659	Right-handed alpha
Helix 22	AC4	A	668	686	Right-handed alpha
Helix 23	AC5	B	63	74	Right-handed alpha
Helix 24	AC6	B	103	111	Right-handed alpha
Helix 25	AC7	B	132	139	Right-handed alpha
Helix 26	AC8	B	140	159	Right-handed alpha
Helix 27	AC9	B	164	180	Right-handed alpha
Helix 28	AD1	B	186	189	Right-handed 310
Helix 29	AD2	B	190	200	Right-handed alpha
Helix 30	AD3	B	208	213	Right-handed alpha
Helix 31	AD4	B	216	229	Right-handed alpha
Helix 32	AD5	B	235	248	Right-handed alpha
Helix 33	AD6	B	295	299	Right-handed 310
Helix 34	AD7	B	333	352	Right-handed alpha
Helix 35	AD8	B	461	476	Right-handed alpha
Helix 36	AD9	B	507	514	Right-handed alpha
Helix 37	AE1	B	515	518	Right-handed 310
Helix 38	AE2	B	519	541	Right-handed alpha
Helix 39	AE3	B	548	550	Right-handed 310
Helix 40	AE4	B	590	597	Right-handed alpha
Helix 41	AE5	B	600	617	Right-handed alpha
Helix 42	AE6	B	627	637	Right-handed alpha
Helix 43	AE7	B	648	659	Right-handed alpha
Helix 44	AE8	B	668	686	Right-handed alpha

There are 8 sheets in PDB entry 6TY4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	98	first strand
Strand 2	A	83	89	anti-parallel
Strand 3	A	120	126	anti-parallel
Strand 4	A	35	40	parallel
Strand 5	A	53	58	anti-parallel
Strand 6	A	399	400	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	294	first strand
Strand 2	A	279	282	anti-parallel
Strand 3	A	268	275	anti-parallel
Strand 4	A	258	262	anti-parallel
Strand 5	A	329	331	anti-parallel
Strand 6	A	314	317	anti-parallel
Strand 7	A	303	306	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	429	430	first strand
Strand 2	A	435	441	anti-parallel
Strand 3	A	449	454	anti-parallel
Strand 4	A	499	500	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	505	506	first strand
Strand 2	A	552	556	anti-parallel
Strand 3	A	559	562	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	98	first strand
Strand 2	B	83	89	anti-parallel
Strand 3	B	120	126	anti-parallel
Strand 4	B	35	40	parallel
Strand 5	B	53	58	anti-parallel
Strand 6	B	399	400	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	294	first strand
Strand 2	B	279	282	anti-parallel
Strand 3	B	268	275	anti-parallel
Strand 4	B	258	262	anti-parallel
Strand 5	B	329	331	anti-parallel
Strand 6	B	314	317	anti-parallel
Strand 7	B	303	306	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	429	430	first strand
Strand 2	B	435	441	anti-parallel
Strand 3	B	449	454	anti-parallel
Strand 4	B	499	500	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	505	506	first strand
Strand 2	B	552	556	anti-parallel
Strand 3	B	559	562	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6TY4

Analysis of interatomic Contacts of Structural Units in PDB entry:
6TY4