Analysis of interatomic Contacts of Structural Units in PDB entry:
6TY6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TY6 entry

There are 3 chains in PDB entry 6TY6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 27HIS 294
B
 ALA 27HIS 295
C
 ALA 27HIS 294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 6TY6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 41Right-handed alpha
Helix 2
AA2
A
71 86Right-handed alpha
Helix 3
AA3
A
98 102Right-handed 310
Helix 4
AA4
A
108 112Right-handed 310
Helix 5
AA5
A
119 129Right-handed alpha
Helix 6
AA6
A
131 143Right-handed alpha
Helix 7
AA7
A
144 155Right-handed alpha
Helix 8
AA8
A
167 171Right-handed 310
Helix 9
AA9
A
182 196Right-handed alpha
Helix 10
AB1
A
200 213Right-handed alpha
Helix 11
AB2
A
220 225Right-handed alpha
Helix 12
AB3
A
271 292Right-handed alpha
Helix 13
AB4
B
28 41Right-handed alpha
Helix 14
AB5
B
71 86Right-handed alpha
Helix 15
AB6
B
98 102Right-handed 310
Helix 16
AB7
B
108 112Right-handed 310
Helix 17
AB8
B
119 129Right-handed alpha
Helix 18
AB9
B
131 143Right-handed alpha
Helix 19
AC1
B
144 155Right-handed alpha
Helix 20
AC2
B
167 171Right-handed 310
Helix 21
AC3
B
182 196Right-handed alpha
Helix 22
AC4
B
200 213Right-handed alpha
Helix 23
AC5
B
220 225Right-handed alpha
Helix 24
AC6
B
271 295Right-handed alpha
Helix 25
AC7
C
28 41Right-handed alpha
Helix 26
AC8
C
71 86Right-handed alpha
Helix 27
AC9
C
98 102Right-handed 310
Helix 28
AD1
C
108 112Right-handed 310
Helix 29
AD2
C
119 129Right-handed alpha
Helix 30
AD3
C
131 143Right-handed alpha
Helix 31
AD4
C
144 155Right-handed alpha
Helix 32
AD5
C
167 171Right-handed 310
Helix 33
AD6
C
182 196Right-handed alpha
Helix 34
AD7
C
200 213Right-handed alpha
Helix 35
AD8
C
220 225Right-handed alpha
Helix 36
AD9
C
271 292Right-handed alpha
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There are 9 sheets in PDB entry 6TY6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 60first strand
Strand 2
A
43 50anti-parallel
Strand 3
A
259 266anti-parallel
Strand 4
A
243 251anti-parallel
Strand 5
A
230 238anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
180 181anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
117 118anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 60first strand
Strand 2
B
43 50anti-parallel
Strand 3
B
259 266anti-parallel
Strand 4
B
243 251anti-parallel
Strand 5
B
230 238anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 67first strand
Strand 2
B
180 181anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 95first strand
Strand 2
B
117 118anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 60first strand
Strand 2
C
43 50anti-parallel
Strand 3
C
259 266anti-parallel
Strand 4
C
243 251anti-parallel
Strand 5
C
230 238anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 67first strand
Strand 2
C
180 181anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
94 95first strand
Strand 2
C
117 118anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il