Analysis of interatomic Contacts of Structural Units in PDB entry:
6TY9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TY9 entry

There are 5 chains in PDB entry 6TY9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5GLY 1212
B
 MET 1VAL 560
M
 A 1 A 1
N
 G 2 U 19
T
 A 1 U 19
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 85 helices in PDB entry 6TY9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 10Right-handed 310
Helix 2
AA2
A
11 16Right-handed alpha
Helix 3
AA3
A
21 36Right-handed alpha
Helix 4
AA4
A
36 45Right-handed alpha
Helix 5
AA5
A
72 77Right-handed alpha
Helix 6
AA6
A
82 86Right-handed 310
Helix 7
AA7
A
108 112Right-handed 310
Helix 8
AA8
A
120 135Right-handed alpha
Helix 9
AA9
A
144 161Right-handed alpha
Helix 10
AB1
A
165 176Right-handed alpha
Helix 11
AB2
A
202 219Right-handed alpha
Helix 12
AB3
A
223 238Right-handed alpha
Helix 13
AB4
A
241 250Right-handed alpha
Helix 14
AB5
A
256 265Right-handed alpha
Helix 15
AB6
A
294 307Right-handed alpha
Helix 16
AB7
A
308 321Right-handed alpha
Helix 17
AB8
A
324 340Right-handed alpha
Helix 18
AB9
A
352 358Right-handed alpha
Helix 19
AC1
A
388 398Right-handed alpha
Helix 20
AC2
A
400 410Right-handed alpha
Helix 21
AC3
A
412 421Right-handed alpha
Helix 22
AC4
A
431 439Right-handed alpha
Helix 23
AC5
A
440 446Right-handed 310
Helix 24
AC6
A
448 456Right-handed alpha
Helix 25
AC7
A
457 460Right-handed 310
Helix 26
AC8
A
463 468Right-handed alpha
Helix 27
AC9
A
495 500Right-handed alpha
Helix 28
AD1
A
500 509Right-handed alpha
Helix 29
AD2
A
510 513Right-handed 310
Helix 30
AD3
A
525 528Right-handed 310
Helix 31
AD4
A
529 536Right-handed alpha
Helix 32
AD5
A
550 555Right-handed alpha
Helix 33
AD6
A
560 573Right-handed alpha
Helix 34
AD7
A
603 615Right-handed alpha
Helix 35
AD8
A
643 665Right-handed alpha
Helix 36
AD9
A
689 706Right-handed alpha
Helix 37
AE1
A
735 739Right-handed 310
Helix 38
AE2
A
755 766Right-handed alpha
Helix 39
AE3
A
767 771Right-handed 310
Helix 40
AE4
A
775 788Right-handed alpha
Helix 41
AE5
A
800 809Right-handed alpha
Helix 42
AE6
A
833 839Right-handed 310
Helix 43
AE7
A
868 871Right-handed 310
Helix 44
AE8
A
872 878Right-handed alpha
Helix 45
AE9
A
880 888Right-handed alpha
Helix 46
AF1
A
893 900Right-handed alpha
Helix 47
AF2
A
901 912Right-handed alpha
Helix 48
AF3
A
912 923Right-handed alpha
Helix 49
AF4
A
926 939Right-handed alpha
Helix 50
AF5
A
946 958Right-handed alpha
Helix 51
AF6
A
971 983Right-handed alpha
Helix 52
AF7
A
987 1006Right-handed alpha
Helix 53
AF8
A
1014 1020Right-handed 310
Helix 54
AF9
A
1034 1038Right-handed 310
Helix 55
AG1
A
1053 1063Right-handed alpha
Helix 56
AG2
A
1066 1078Right-handed alpha
Helix 57
AG3
A
1090 1103Right-handed alpha
Helix 58
AG4
A
1106 1114Right-handed alpha
Helix 59
AG5
A
1117 1132Right-handed alpha
Helix 60
AG6
A
1154 1159Right-handed 310
Helix 61
AG7
A
1165 1169Right-handed 310
Helix 62
AG8
A
1173 1189Right-handed alpha
Helix 63
AG9
A
1190 1193Right-handed 310
Helix 64
AH1
A
1203 1212Right-handed alpha
Helix 65
AH2
B
9 16Right-handed alpha
Helix 66
AH3
B
41 61Right-handed alpha
Helix 67
AH4
B
69 78Right-handed alpha
Helix 68
AH5
B
135 147Right-handed alpha
Helix 69
AH6
B
161 167Right-handed alpha
Helix 70
AH7
B
169 177Right-handed alpha
Helix 71
AH8
B
195 202Right-handed alpha
Helix 72
AH9
B
235 243Right-handed alpha
Helix 73
AI1
B
289 296Right-handed alpha
Helix 74
AI2
B
325 341Right-handed alpha
Helix 75
AI3
B
358 375Right-handed alpha
Helix 76
AI4
B
384 394Right-handed alpha
Helix 77
AI5
B
402 409Right-handed alpha
Helix 78
AI6
B
416 429Right-handed alpha
Helix 79
AI7
B
433 439Right-handed alpha
Helix 80
AI8
B
441 458Right-handed alpha
Helix 81
AI9
B
467 477Right-handed alpha
Helix 82
AJ1
B
491 497Right-handed 310
Helix 83
AJ2
B
512 519Right-handed alpha
Helix 84
AJ3
B
523 536Right-handed alpha
Helix 85
AJ4
B
546 557Right-handed alpha
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There are 15 sheets in PDB entry 6TY9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 58first strand
Strand 2
A
64 68anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 186first strand
Strand 2
A
191 194anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 272first strand
Strand 2
A
278 285anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 384first strand
Strand 2
A
370 374anti-parallel
Strand 3
A
585 591anti-parallel
Strand 4
A
598 602anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
475 477first strand
Strand 2
A
489 491anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
672 678first strand
Strand 2
A
681 687anti-parallel
Strand 3
A
541 544anti-parallel
Strand 4
A
715 716anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
547 548first strand
Strand 2
A
711 712anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
621 624first strand
Strand 2
A
628 631anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
720 721first strand
Strand 2
A
726 727anti-parallel
Strand 3
A
732 733anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
791 797first strand
Strand 2
A
825 831anti-parallel
Strand 3
A
813 816anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1022 1030first strand
Strand 2
A
1196 1202anti-parallel
Strand 3
A
1162 1163parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 159first strand
Strand 2
B
182 184parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 208first strand
Strand 2
B
226 230parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
297 299first strand
Strand 2
B
266 271anti-parallel
Strand 3
B
255 261anti-parallel
Strand 4
B
313 319anti-parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
378 381first strand
Strand 2
B
484 489parallel
Strand 3
B
347 352parallel
Strand 4
B
504 507parallel
Strand 5
B
543 545parallel
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