Analysis of interatomic Contacts of Structural Units in PDB entry:
6TYD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TYD entry

There are 3 chains in PDB entry 6TYD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
V
 GLY 64VAL 282
A
 SER 10TYR 94
B
 ALA 11GLU 77
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6TYD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
V
67 79Right-handed alpha
Helix 2
AA2
V
86 97Right-handed alpha
Helix 3
AA3
V
120 122Right-handed 310
Helix 4
AA4
V
123 134Right-handed alpha
Helix 5
AA5
V
209 216Right-handed alpha
Helix 6
AA6
V
219 224Right-handed alpha
Helix 7
AA7
V
225 228Right-handed 310
Helix 8
AA8
V
236 262Right-handed alpha
Helix 9
AA9
V
265 282Right-handed alpha
Helix 10
AB1
A
14 34Right-handed alpha
Helix 11
AB2
A
35 46Right-handed alpha
Helix 12
AB3
A
59 73Right-handed alpha
Helix 13
AB4
A
86 94Right-handed alpha
Helix 14
AB5
B
14 34Right-handed alpha
Helix 15
AB6
B
35 47Right-handed alpha
Helix 16
AB7
B
59 75Right-handed alpha
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There are 2 sheets in PDB entry 6TYD. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
V
115 119first strand
Strand 2
V
98 108anti-parallel
Strand 3
V
194 207parallel
Strand 4
V
175 187anti-parallel
Strand 5
V
154 168anti-parallel
Strand 6
V
136 144anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
V
115 119first strand
Strand 2
V
98 108anti-parallel
Strand 3
V
194 207parallel
Strand 4
V
175 187anti-parallel
Strand 5
V
154 168anti-parallel
Strand 6
V
147 150anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il